[PRE REVIEW]: pridepy: A Python package to download and search data from PRIDE database

[editorialbot]

Submitting author: !--author-handle-->@ypriverol<!--end-author-handle-- (Yasset Perez-Riverol) Repository: https://github.com/PRIDE-Archive/pridepy Branch with paper.md (empty if default branch): master Version: v0.0.4 Editor: Pending Reviewers: Pending Managing EiC: Kevin M. Moerman

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Thanks for submitting your paper to JOSS @ypriverol. Currently, there isn't a JOSS editor assigned to your paper.

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[editorialbot]

Software report:

github.com/AlDanial/cloc v 1.90  T=0.04 s (816.9 files/s, 204365.9 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
SVG                              2              0             56           4113
Python                          14            278            410           1440
YAML                             7             30             14            204
TeX                              1              4              0            186
CSV                              1              0              0            156
Markdown                         2             60              0            148
Bourne Shell                     1             22             24             95
XML                              1              4              0             11
-------------------------------------------------------------------------------
SUM:                            29            398            504           6353
-------------------------------------------------------------------------------

Commit count by author:

   136  Yasset Perez-Riverol
    15  selvakumar kamatchinathan
    11  selva
    10  ypriverol
     9  Chakradhar Bandla
     8  Suresh Hewapathirana
     2  sureshhewa
     1  Chakra

[editorialbot]

Paper file info:

📄 Wordcount for paper.md is 1185

✅ The paper includes a Statement of need section

[editorialbot]

License info:

✅ License found: Apache License 2.0 (Valid open source OSI approved license)

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- None

🟡 SKIP DOIs

- No DOI given, and none found for title: The PRIDE database resources in 2022: a hub for ma...
- No DOI given, and none found for title: The ProteomeXchange consortium at 10 years: 2023 u...
- No DOI given, and none found for title: EMBL’s European bioinformatics institute (EMBL-EBI...

❌ MISSING DOIs

- 10.1038/s41592-024-02343-1 may be a valid DOI for title: Quantms: A cloud-based pipeline for quantitative p...
- 10.1080/14789450.2023.2265062 may be a valid DOI for title: A Galaxy of informatics resources for MS-based pro...

❌ INVALID DOIs

- None

[editorialbot]

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

[editorialbot]

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⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

[ypriverol]

Some suggested reviewers:

• Michael Lazear
• prvst
• MohmedSoudy

[arfon]

@ypriverol - thanks for your submission to JOSS. We're currently managing a large backlog of submissions and the editor most appropriate for your area is already rather busy.

For now, we will need to waitlist this paper and process it as the queue reduces. Thanks for your patience!

[Kevin-Mattheus-Moerman]

@editorialbot invite @skanwal as editor

[editorialbot]

Invitation to edit this submission sent!

[Kevin-Mattheus-Moerman]

@skanwal do you think you could help edit this submission? I was wondering if you could take it on, given that one of the submissions you are handling is about to be accepted. Thanks!

[Kevin-Mattheus-Moerman]

@skanwal :wave: