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Reviews for the Journal of Open Source Software
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[REVIEW]: ggoncoplot: an R package for interactive visualisation of somatic mutation data from cancer patient cohorts #7390

Open editorialbot opened 1 month ago

editorialbot commented 1 month ago

Submitting author: !--author-handle-->@selkamand<!--end-author-handle-- (Sam El-Kamand) Repository: https://github.com/selkamand/ggoncoplot Branch with paper.md (empty if default branch): Version: v0.1.0 Editor: !--editor-->@ppxasjsm<!--end-editor-- Reviewers: !--reviewers-list-->@zainabarshad<!--end-reviewers-list-- Archive: Pending

Status

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editorialbot commented 1 month ago

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editorialbot commented 1 month ago

Software report:

github.com/AlDanial/cloc v 1.90  T=0.03 s (1232.9 files/s, 246032.5 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
R                               12            321           1473           1267
XML                              1              0              0           1125
CSV                              3              0              0            824
Markdown                         5            105              0            331
Rmd                              3            190            239            255
YAML                             5             25              7            112
TeX                              1              9              0            101
SVG                              2              0              0              2
-------------------------------------------------------------------------------
SUM:                            32            650           1719           4017
-------------------------------------------------------------------------------

Commit count by author:

    69  Sam El-Kamand
    36  Sam
    29  selkamand
    19  unknown
editorialbot commented 1 month ago
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.1002/imt2.43 is OK
- 10.1101/gr.239244.118 is OK
- 10.1093/bioinformatics/btw325 is OK
- 10.32614/CRAN.package.ggiraph is OK
- 10.32614/cran.package.patchwork is OK
- 10.32614/CRAN.package.ggplot2 is OK
- 10.1038/s41587-020-0546-8 is OK
- 10.1016/j.cels.2018.03.002 is OK

🟡 SKIP DOIs

- None

❌ MISSING DOIs

- None

❌ INVALID DOIs

- None
editorialbot commented 1 month ago

Paper file info:

📄 Wordcount for paper.md is 932

✅ The paper includes a Statement of need section

editorialbot commented 1 month ago

License info:

🟡 License found: Other (Check here for OSI approval)

editorialbot commented 1 month ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

ppxasjsm commented 2 weeks ago

Hi @zainabarshad, please let me know if you need any help getting started with this review!