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[PRE REVIEW]: Foragax: A Python package for Agent-Based Modelling using JAX #7416

Closed editorialbot closed 2 days ago

editorialbot commented 3 weeks ago

Submitting author: !--author-handle-->@i-m-iron-man<!--end-author-handle-- (Siddharth Chaturvedi) Repository: https://github.com/i-m-iron-man/Foragax Branch with paper.md (empty if default branch): main Version: v0.0.5 Editor: Pending Reviewers: Pending Managing EiC: Daniel S. Katz

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status

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editorialbot commented 3 weeks ago

Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

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For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

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editorialbot commented 3 weeks ago
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- None

🟡 SKIP DOIs

- No DOI given, and none found for title: Decision making in open agent systems
- No DOI given, and none found for title: JAX: composable transformations of Python+NumPy pr...
- No DOI given, and none found for title: Utilizing python for agent-based modeling: The mes...

❌ MISSING DOIs

- 10.1145/3583133.3590703 may be a valid DOI for title: Eco-evolutionary dynamics of non-episodic neuroevo...

❌ INVALID DOIs

- None
editorialbot commented 3 weeks ago

Software report:

github.com/AlDanial/cloc v 1.90  T=0.02 s (872.5 files/s, 123551.5 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Python                           7            265             26            897
Jupyter Notebook                 2              0            371            489
Markdown                         5             84              0            321
TeX                              1              0              0             32
TOML                             1              4              0             29
YAML                             1              1              4             19
JSON                             1              0              0              7
-------------------------------------------------------------------------------
SUM:                            18            354            401           1794
-------------------------------------------------------------------------------

Commit count by author:

    52  i-m-iron-man
    11  Siddharth Chaturvedi
editorialbot commented 3 weeks ago

Paper file info:

📄 Wordcount for paper.md is 670

✅ The paper includes a Statement of need section

editorialbot commented 3 weeks ago

License info:

✅ License found: Apache License 2.0 (Valid open source OSI approved license)

editorialbot commented 3 weeks ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

editorialbot commented 3 weeks ago

Five most similar historical JOSS papers:

AgentPy: A package for agent-based modeling in Python Submitting author: @JoelForamitti Handling editor: @sbenthall (Active) Reviewers: @jamesdamillington, @martibosch Similarity score: 0.7349

Agents.jl: agent-based modeling framework in Julia Submitting author: @kavir1698 Handling editor: @jedbrown (Active) Reviewers: @Datseris, @mozhgan-kch Similarity score: 0.7176

Cacatoo: building, exploring, and sharing spatially structured models of biological systems Submitting author: @bramvandijk88 Handling editor: @Bisaloo (Retired) Reviewers: @emilydolson, @TimKam Similarity score: 0.7132

neworder: a dynamic microsimulation framework for Python Submitting author: @virgesmith Handling editor: @danielskatz (Active) Reviewers: @platipodium, @tresoldi Similarity score: 0.7058

dfba: Software for efficient simulation of dynamic flux-balance analysis models in Python Submitting author: @davidtourigny Handling editor: @marcosvital (Active) Reviewers: @jdbrunner, @pstjohn, @synchon Similarity score: 0.6996

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

danielskatz commented 3 weeks ago

👋 @i-m-iron-man - thanks for your submission. Due to the relatively small amount of code, the editors will now discuss if it meets the substantial scholarly effort criterion for review by JOSS. You should hear back in a couple of weeks.

In addition, you could work on the possibly missing DOI that editorialbot suggests, but note that it may be incorrect. Please feel free to make changes to your .bib file, then use the command @editorialbot check references to check again, and the command @editorialbot generate pdf when the references are right to make a new PDF. editorialbot commands need to be the first entry in a new comment.

danielskatz commented 3 weeks ago

@editorialbot query scope

editorialbot commented 3 weeks ago

Submission flagged for editorial review.

i-m-iron-man commented 2 weeks ago

suggested reviewer: Alessandro Gerada

danielskatz commented 2 days ago

👋 @i-m-iron-man - I'm sorry to say that after discussion amongst the JOSS editors, we have decided that this submission does not meet the substantial scholarly effort criterion for review by JOSS. Please see https://joss.readthedocs.io/en/latest/submitting.html#other-venues-for-reviewing-and-publishing-software-packages for other suggestions for how you might receive credit for your work.

danielskatz commented 2 days ago

@editorialbot reject

editorialbot commented 2 days ago

Paper rejected.