openjournals / joss-reviews

Reviews for the Journal of Open Source Software
Creative Commons Zero v1.0 Universal
725 stars 38 forks source link

[PRE REVIEW]: Underworld3: Mathematically Self-Describing Modelling in Python for Desktop, HPC and Cloud #7436

Open editorialbot opened 2 weeks ago

editorialbot commented 2 weeks ago

Submitting author: !--author-handle-->@lmoresi<!--end-author-handle-- (Louis Moresi) Repository: https://github.com/underworldcode/underworld3 Branch with paper.md (empty if default branch): joss-submission Version: 0.99.0b Editor: Pending Reviewers: Pending Managing EiC: Kristen Thyng

Status

status

Status badge code:

HTML: <a href="https://joss.theoj.org/papers/4f7a1ed76bde560968c246fa8eff778d"><img src="https://joss.theoj.org/papers/4f7a1ed76bde560968c246fa8eff778d/status.svg"></a>
Markdown: [![status](https://joss.theoj.org/papers/4f7a1ed76bde560968c246fa8eff778d/status.svg)](https://joss.theoj.org/papers/4f7a1ed76bde560968c246fa8eff778d)

Author instructions

Thanks for submitting your paper to JOSS @lmoresi. Currently, there isn't a JOSS editor assigned to your paper.

@lmoresi if you have any suggestions for potential reviewers then please mention them here in this thread (without tagging them with an @). You can search the list of people that have already agreed to review and may be suitable for this submission.

Editor instructions

The JOSS submission bot @editorialbot is here to help you find and assign reviewers and start the main review. To find out what @editorialbot can do for you type:

@editorialbot commands
editorialbot commented 2 weeks ago

Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@editorialbot commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@editorialbot generate pdf
editorialbot commented 2 weeks ago
Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.2172/2337606 is OK
- 10.21105/joss.01136 is OK
- 10.1016/j.advwatres.2011.04.013 is OK
- 10.1109/MCSE.2021.3059263 is OK
- 10.21105/joss.01797 is OK
- 10.7717/peerj-cs.103 is OK
- 10.1016/j.pepi.2007.06.009 is OK
- 10.1016/S0021-9991(02)00031-1 is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: Achieving High Performance with Unified Residual E...

❌ MISSING DOIs

- 10.1109/mcse.2010.118 may be a valid DOI for title: Cython: The Best of Both Worlds

❌ INVALID DOIs

- None
editorialbot commented 2 weeks ago

Software report:

github.com/AlDanial/cloc v 1.90  T=0.52 s (314.4 files/s, 83218.4 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Python                          68           5610           4809          15044
Cython                           9           1122            973           2319
CSS                              4             39             19           2236
C/C++ Header                     5            289            690           1372
HTML                            22             55              6           1023
JavaScript                       7            103            100            826
Jupyter Notebook                 9              0           3767            723
Markdown                        12            218              0            548
YAML                            14             73             46            413
C                                2             40             69            359
TeX                              2             21             13            331
XML                              1              0              0            225
JSON                             3              0              0             79
Bourne Shell                     5             17             20             37
INI                              1              5              0             14
Sass                             1              5              7              9
-------------------------------------------------------------------------------
SUM:                           165           7597          10519          25558
-------------------------------------------------------------------------------

Commit count by author:

   598  Louis Moresi
    82  julian
    71  Romain Beucher
    60  Ben Knight
    59  Julian Giordani
    39  jmansour
    31  Matthew G. Knepley
    17  john mansour
     7  Thyagarajulu Gollapalli
     5  jcgraciosa
     4  NengLu
     4  Tyagi
     3  Juan Carlos Graciosa
     3  Owen Kaluza
     1  Ben Mather
     1  Matthew Knepley
     1  Rebecca Farrington
     1  YangHaibin1102
editorialbot commented 2 weeks ago

Paper file info:

📄 Wordcount for paper.md is 1096

✅ The paper includes a Statement of need section

editorialbot commented 2 weeks ago

License info:

🟡 License found: Other (Check here for OSI approval)

editorialbot commented 2 weeks ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

editorialbot commented 2 weeks ago

Five most similar historical JOSS papers:

Underworld2: Python Geodynamics Modelling for Desktop, HPC and Cloud Submitting author: @jmansour Handling editor: @leouieda (Retired) Reviewers: @gassmoeller, @gabersyd Similarity score: 0.7629

$hp\mathrm{3D}$: A Scalable MPI/OpenMP $hp$-Adaptive Finite Element Software Library for Complex Multiphysics Applications Submitting author: @stefanhenneking Handling editor: @jedbrown (Active) Reviewers: @peterrum, @likask Similarity score: 0.7623

PyGDH: Python Grid Discretization Helper Submitting author: @kfhiga Handling editor: @melissawm (Retired) Reviewers: @JamieJQuinn, @zhaowei0566 Similarity score: 0.7480

Capytaine: a Python-based linear potential flow solver Submitting author: @mancellin Handling editor: @leouieda (Retired) Reviewers: @mikaem, @harpolea Similarity score: 0.7431

Bluebonnet: Scaling solutions for production analysis from unconventional oil and gas wells Submitting author: @frank1010111 Handling editor: @matthewfeickert (Active) Reviewers: @AnantHariharan1996, @RyanSwindeman Similarity score: 0.7376

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

kthyng commented 2 weeks ago

Hi @lmoresi and thanks for your submission! I am looking for some specific items to make sure your submission fits our requirements at a high level (not at the more detailed review level) before moving on to finding an editor or putting this on our waitlist if no relevant editors are available. I'll comment over time as I have a chance to go through them:

In the meantime, please take a look at the comments above ⬆️ from the editorialbot to address any DOI, license, or paper issues if you're able (there may not be any), or suggest reviewers. For reviewers, please suggest 5 reviewers from the database listed above or your own (non-conflicted) extended network. Their github handles are most useful to receive but please don't use "@" to reference them since it will prematurely ping them.

kthyng commented 2 weeks ago

We have a backlog of submissions so I will add this to our waitlist. Thanks for your patience. (and please take care of the tasks listed in the above comment)

lmoresi commented 1 week ago

Potential reviewers from the reviewer list:

There is a mix here of people who have worked on large python/C projects and some people more expert in PDEs / applications