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[PRE REVIEW]: rmstBayespara: An R Package for Bayesian Parametric Restricted Mean Survival Time #7440

Open editorialbot opened 2 weeks ago

editorialbot commented 2 weeks ago

Submitting author: !--author-handle-->@masahikoji<!--end-author-handle-- (Masahiro Kojima) Repository: https://github.com/masahikoji/rmstBayespara_paper Branch with paper.md (empty if default branch): joss-paper Version: v1.0.0 Editor: Pending Reviewers: Pending Managing EiC: Chris Vernon

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editorialbot commented 2 weeks ago

Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks.

For a list of things I can do to help you, just type:

@editorialbot commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type:

@editorialbot generate pdf
editorialbot commented 2 weeks ago

:warning: An error happened when generating the pdf.

masahikoji commented 2 weeks ago

@editorialbot generate pdf

2024/11/08 10:58、The Open Journals editorial robot @.***>のメール:

Hello human, I'm @editorialbot, a robot that can help you with some common editorial tasks. For a list of things I can do to help you, just type: @editorialbot commands

For example, to regenerate the paper pdf after making changes in the paper's md or bib files, type: @editorialbot generate pdf

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you were mentioned.Message ID: @.***>

editorialbot commented 2 weeks ago

:warning: An error happened when generating the pdf.

masahikoji commented 2 weeks ago

@editorialbot commands

2024/11/08 16:32、The Open Journals editorial robot @.***>のメール:

⚠️ An error happened when generating the pdf https://github.com/openjournals/joss-papers/actions/runs/11737966383?check_suite_focus=true.

— Reply to this email directly, view it on GitHub https://github.com/openjournals/joss-reviews/issues/7440#issuecomment-2463954823, or unsubscribe https://github.com/notifications/unsubscribe-auth/BJDXVYIL3NRZZN6S6SOZB7TZ7RSJPAVCNFSM6AAAAABRMPQEUGVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDINRTHE2TIOBSGM. You are receiving this because you were mentioned.

editorialbot commented 2 weeks ago

Hello @masahikoji, here are the things you can ask me to do:


# List all available commands
@editorialbot commands

# Get a list of all editors's GitHub handles
@editorialbot list editors

# Adds a checklist for the reviewer using this command
@editorialbot generate my checklist

# Set a value for branch
@editorialbot set joss-paper as branch

# Run checks and provide information on the repository and the paper file
@editorialbot check repository

# Check the references of the paper for missing DOIs
@editorialbot check references

# Generates the pdf paper
@editorialbot generate pdf

# Generates a LaTeX preprint file
@editorialbot generate preprint

# Get a link to the complete list of reviewers
@editorialbot list reviewers
masahikoji commented 2 weeks ago

@editorialbot set joss-paper as branch

2024/11/08 17:21、The Open Journals editorial robot @.***>のメール:

@editorialbot set joss-paper as branch

editorialbot commented 2 weeks ago

Done! branch is now joss-paper

masahikoji commented 2 weeks ago

@editorialbot check repository

2024/11/08 17:23、The Open Journals editorial robot @.***>のメール:

Done! branch is now joss-paper

— Reply to this email directly, view it on GitHub https://github.com/openjournals/joss-reviews/issues/7440#issuecomment-2464103552, or unsubscribe https://github.com/notifications/unsubscribe-auth/BJDXVYKGFIC4HOUKOLRJSU3Z7RYHHAVCNFSM6AAAAABRMPQEUGVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDINRUGEYDGNJVGI. You are receiving this because you were mentioned.

masahikoji commented 2 weeks ago

@editorialbot generate pdf

2024/11/08 17:23、The Open Journals editorial robot @.***>のメール:

Done! branch is now joss-paper

— Reply to this email directly, view it on GitHub https://github.com/openjournals/joss-reviews/issues/7440#issuecomment-2464103552, or unsubscribe https://github.com/notifications/unsubscribe-auth/BJDXVYKGFIC4HOUKOLRJSU3Z7RYHHAVCNFSM6AAAAABRMPQEUGVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDINRUGEYDGNJVGI. You are receiving this because you were mentioned.

editorialbot commented 2 weeks ago

:warning: An error happened when generating the pdf.

masahikoji commented 2 weeks ago

@editorialbot generate pdf

2024/11/08 17:25、The Open Journals editorial robot @.***>のメール:

⚠️ An error happened when generating the pdf https://github.com/openjournals/joss-papers/actions/runs/11738608540?check_suite_focus=true.

— Reply to this email directly, view it on GitHub https://github.com/openjournals/joss-reviews/issues/7440#issuecomment-2464106939, or unsubscribe https://github.com/notifications/unsubscribe-auth/BJDXVYLI52VIVE7TXPJSGILZ7RYPHAVCNFSM6AAAAABRMPQEUGVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDINRUGEYDMOJTHE. You are receiving this because you were mentioned.

editorialbot commented 2 weeks ago

:warning: An error happened when generating the pdf.

masahikoji commented 2 weeks ago

@editorialbot generate pdf

2024/11/08 17:34、小島将裕 @.***>のメール:

@editorialbot generate pdf

editorialbot commented 2 weeks ago

:warning: An error happened when generating the pdf.

masahikoji commented 2 weeks ago

@editorialbot generate pdf

2024/11/08 17:38、小島将裕 @.***>のメール:

@editorialbot generate pdf

editorialbot commented 2 weeks ago

:warning: An error happened when generating the pdf.

masahikoji commented 2 weeks ago

@editorialbot generate pdf

2024/11/08 17:45、小島将裕 @.***>のメール:

@editorialbot generate pdf

editorialbot commented 2 weeks ago

:warning: An error happened when generating the pdf.

masahikoji commented 2 weeks ago

@editorialbot generate pdf

2024/11/08 18:03、小島将裕 @.***>のメール:

@editorialbot generate pdf

editorialbot commented 2 weeks ago

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

editorialbot commented 2 weeks ago

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⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

crvernon commented 1 week ago

@editorialbot check repository

editorialbot commented 1 week ago

Software report:

github.com/AlDanial/cloc v 1.90  T=0.01 s (398.6 files/s, 45302.9 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Markdown                         1             55              0            186
TeX                              1              6              1             65
YAML                             1              1              4             23
-------------------------------------------------------------------------------
SUM:                             3             62              5            274
-------------------------------------------------------------------------------

Commit count by author:

    19  masahikoji
editorialbot commented 1 week ago

Paper file info:

📄 Wordcount for paper.md is 1052

✅ The paper includes a Statement of need section

editorialbot commented 1 week ago

License info:

🔴 Failed to discover a valid open source license

crvernon commented 1 week ago

@masahikoji - I don't see any code in this repository at all. Please check and clarify.

masahikoji commented 1 week ago

Dear Vernon,

Thank you for your confirmation.

The code is stored in a co-author's repository. https://github.com/keisuke-hanada/rmstBayespara

Best regards, Masahiro Kojima

2024/11/10 1:42、Chris Vernon @.***>のメール:

@masahikoji - I don't see any code in this repository at all. Please check and clarify. — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you were mentioned.Message ID: @.***>

crvernon commented 1 week ago

@masahikoji - the code needs to be in the same repository as your paper. Please adjust this and let me know which repository the code and paper to be reviewed will be in. Thank you.

masahikoji commented 1 week ago

Dear Dr. Vernon,

Thank you for your confirmation. I uploaded the codes in the submitted repository. https://github.com/masahikoji/rmstBayespara_paper

Best regards, Masahiro Kojima

2024/11/12 22:49、Chris Vernon @.***>のメール:

@masahikoji - the code needs to be in the same repository as your paper. Please adjust this and let me know which repository the code and paper to be reviewed will be in. Thank you. — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you were mentioned.Message ID: @.***>

crvernon commented 1 week ago

@editorialbot check repository

editorialbot commented 1 week ago

Software report:

github.com/AlDanial/cloc v 1.90  T=0.01 s (422.3 files/s, 48000.1 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Markdown                         1             55              0            186
TeX                              1              6              1             65
YAML                             1              1              4             23
-------------------------------------------------------------------------------
SUM:                             3             62              5            274
-------------------------------------------------------------------------------

Commit count by author:

    19  masahikoji
editorialbot commented 1 week ago

Paper file info:

📄 Wordcount for paper.md is 1052

✅ The paper includes a Statement of need section

editorialbot commented 1 week ago

License info:

🔴 Failed to discover a valid open source license

masahikoji commented 1 week ago

@editorialbot check repository

2024/11/14 11:03、The Open Journals editorial robot @.***>のメール:

License info: 🔴 Failed to discover a valid open source license — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you were mentioned.Message ID: @.***>

editorialbot commented 1 week ago

Software report:

github.com/AlDanial/cloc v 1.90  T=0.01 s (399.3 files/s, 45387.7 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
Markdown                         1             55              0            186
TeX                              1              6              1             65
YAML                             1              1              4             23
-------------------------------------------------------------------------------
SUM:                             3             62              5            274
-------------------------------------------------------------------------------

Commit count by author:

    19  masahikoji
editorialbot commented 1 week ago

Paper file info:

📄 Wordcount for paper.md is 1052

✅ The paper includes a Statement of need section

editorialbot commented 1 week ago

License info:

🔴 Failed to discover a valid open source license

masahikoji commented 1 week ago

@editorialbot check repository

2024/11/14 13:13、小島将裕 @.***>のメール:

@editorialbot check repository

editorialbot commented 1 week ago

Software report:

github.com/AlDanial/cloc v 1.90  T=0.01 s (959.1 files/s, 114919.6 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
R                                5             12            111            758
Markdown                         4             84              0            253
TeX                              1              6              1             65
YAML                             1              1              4             23
-------------------------------------------------------------------------------
SUM:                            11            103            116           1099
-------------------------------------------------------------------------------

Commit count by author:

    21  masahikoji
editorialbot commented 1 week ago

Paper file info:

📄 Wordcount for paper.md is 1052

✅ The paper includes a Statement of need section

editorialbot commented 1 week ago

License info:

🟡 License found: GNU General Public License v3.0 (Check here for OSI approval)

crvernon commented 1 week ago

@editorialbot review scope

:wave: @masahikoji - I am going to run this through review with our larger editorial board to ensure that it meets scope requirements. I'll get back in touch ASAP.

editorialbot commented 1 week ago

I'm sorry human, I don't understand that. You can see what commands I support by typing:

@editorialbot commands

crvernon commented 1 week ago

@editorialbot query scope

editorialbot commented 1 week ago

Submission flagged for editorial review.