[PRE REVIEW]: svZeroDSolver: A modular package for lumped-parameter cardiovascular simulations

[editorialbot]

Submitting author: !--author-handle-->@menon-karthik<!--end-author-handle-- (Karthik Menon) Repository: https://github.com/SimVascular/svZeroDSolver.git Branch with paper.md (empty if default branch): paper Version: v2.0 Editor: Pending Reviewers: Pending Managing EiC: Arfon Smith

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Software report:

github.com/AlDanial/cloc v 1.90  T=5.86 s (33.8 files/s, 46029.4 lines/s)
-------------------------------------------------------------------------------
Language                     files          blank        comment           code
-------------------------------------------------------------------------------
JSON                            72              0              0         249009
C++                             37            662           1538           3640
CSS                              2            414            166           1953
JavaScript                       5            452            256           1650
Python                          15            356            487           1474
C/C++ Header                    34            374           3805           1099
Markdown                         7            150              0            449
TeX                              2             32              0            376
CMake                           11             85            261            258
YAML                             8             20             19            231
XML                              1              6              9            226
HTML                             1             13              3            148
Dockerfile                       1              4              1             27
TOML                             1              1              0              8
Bourne Shell                     1              1              0              4
-------------------------------------------------------------------------------
SUM:                           198           2570           6545         260552
-------------------------------------------------------------------------------

Commit count by author:

    42  Karthik Menon
    29  Martin R. Pfaller
    25  Jonathan Pham
    19  Jakob Richter
    15  menon-karthik
    13  mrp089
    11  Martin Pfaller
     8  Dave Parker
     3  Nick Dorn
     2  emilinmathew

[editorialbot]

Paper file info:

📄 Wordcount for paper.md is 1716

✅ The paper includes a Statement of need section

[editorialbot]

Reference check summary (note 'MISSING' DOIs are suggestions that need verification):

✅ OK DOIs

- 10.1007/s10439-010-0083-6 is OK
- 10.1002/cnm.3639 is OK
- 10.1007/s10439-021-02796-x is OK
- 10.1016/j.wavemoti.2003.12.009 is OK
- 10.1017/flo.2024.5 is OK
- 10.1101/2023.08.17.23294242 is OK
- 10.1007/s10439-009-9760-8 is OK
- 10.1146/ANNUREV-FLUID-010313-141341 is OK
- 10.1007/s10439-016-1762-8 is OK
- 10.21105/joss.04118 is OK
- 10.1016/j.cma.2005.04.014 is OK
- 10.1115/1.4042184 is OK

🟡 SKIP DOIs

- No DOI given, and none found for title: A generalized-alpha method for integrating the fil...
- No DOI given, and none found for title: Computational Fluid-Structure Interaction
- No DOI given, and none found for title: Predictors of Myocardial Ischemia in Patients with...
- No DOI given, and none found for title: Bayesian Windkessel calibration using optimized 0D...
- No DOI given, and none found for title: Eigen v3
- No DOI given, and none found for title: Hybrid Physics-Based and Data-Driven Modeling of V...
- No DOI given, and none found for title: Personalized and uncertainty-aware coronary hemody...

❌ MISSING DOIs

- 10.1007/s10237-018-1098-4 may be a valid DOI for title: The importance of the pericardium for cardiac biom...
- 10.1007/s10439-012-0579-3 may be a valid DOI for title: Patient-specific multiscale modeling of blood flow...
- 10.1007/s10439-006-9212-7 may be a valid DOI for title: Coupling of a 3D finite element model of cardiac v...

❌ INVALID DOIs

- https://doi.org/10.1016/j.cma.2023.116414 is INVALID because of 'https://doi.org/' prefix
- https://doi.org/10.1002/cnm.3820 is INVALID because of 'https://doi.org/' prefix
- https://doi.org/10.1016/j.cma.2024.117119 is INVALID because of 'https://doi.org/' prefix
- https://doi.org/10.1016/B978-0-323-95484-6.00016-6 is INVALID because of 'https://doi.org/' prefix

[editorialbot]

License info:

🟡 License found: Other (Check here for OSI approval)

[editorialbot]

:point_right::page_facing_up: Download article proof :page_facing_up: View article proof on GitHub :page_facing_up: :point_left:

[editorialbot]

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OpenCMP: An Open-Source Computational Multiphysics Package Submitting author: @nasserma Handling editor: @lucydot (Active) Reviewers: @bonh, @WilkAndy Similarity score: 0.7137

Ambit – A FEniCS-based cardiovascular multi-physics solver Submitting author: @marchirschvogel Handling editor: @Kevin-Mattheus-Moerman (Active) Reviewers: @finsberg, @IgorBaratta, @CZHU20 Similarity score: 0.6983

Artery.FE: An implementation of the 1D blood flow equations in FEniCS Submitting author: @akdiem Handling editor: @trallard (Retired) Reviewers: @dlagrava, @jhill1 Similarity score: 0.6957

⚠️ Note to editors: If these papers look like they might be a good match, click through to the review issue for that paper and invite one or more of the authors before considering asking the reviewers of these papers to review again for JOSS.

[arfon]

@menon-karthik - thanks for your submission to JOSS. We're currently managing a large backlog of submissions and the editor most appropriate for your area is already rather busy.

For now, we will need to waitlist this paper and process it as the queue reduces. Thanks for your patience!