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OpenMC Monte Carlo Code
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Installation Problems #2059

Closed cfichtlscherer closed 2 years ago

cfichtlscherer commented 2 years ago

Trying to install the current develop version of OpenMC (commit 85cf539db32965cef02c7f6e1c8ad41d207653cf) runs for me into the following error:

Screenshot from 2022-05-05 10-12-49

When I go back through the commits to see where the error occurs, I find that the error occurred in commit 2ab0e23bc6efe37a62d10d9ba1140e608ef1b686 (Mar 17).

In this commit, some changes have been made to the CMakeLists.txt file that are responsible for the error, since when I use the CMakeLists.txt file from an older commit, with the newer version, I don't get the error.

Unfortunately, I don't understand what has been changed here and how to work around this error. Maybe someone had a similar problem or could help me.

Thank you very very much.

paulromano commented 2 years ago

@cfichtlscherer If you haven't yet, I would try clearing out your build directory and then rerunning cmake and make. If you're still having problems, can you post the output from running cmake?

cfichtlscherer commented 2 years ago

@paulromano yes I stell get this error message. The cmake output is:

-- The C compiler identification is GNU 10.3.0
-- The CXX compiler identification is GNU 10.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- No build type selected, defaulting to RelWithDebInfo
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") 
-- Found PNG: /usr/lib/x86_64-linux-gnu/libpng.so (found version "1.6.37") 
-- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.6") found components: C HL 
-- Found OpenMP_C: -fopenmp (found version "4.5") 
-- Found OpenMP_CXX: -fopenmp (found version "4.5") 
-- Found OpenMP: TRUE (found version "4.5")  
-- OpenMC C++ flags: -fopenmp
-- OpenMC Linker flags: -fopenmp
-- Found Git: /usr/bin/git (found version "2.30.2") 
-- Submodule update
Submodule 'vendor/fmt' (https://github.com/fmtlib/fmt.git) registered for path 'vendor/fmt'
Submodule 'vendor/gsl-lite' (https://github.com/martinmoene/gsl-lite.git) registered for path 'vendor/gsl-lite'
Submodule 'vendor/pugixml' (https://github.com/zeux/pugixml.git) registered for path 'vendor/pugixml'
Submodule 'vendor/xtensor' (https://github.com/xtensor-stack/xtensor.git) registered for path 'vendor/xtensor'
Submodule 'vendor/xtl' (https://github.com/xtensor-stack/xtl.git) registered for path 'vendor/xtl'
Cloning into '/home/cpf/Desktop/openmc/vendor/fmt'...
Cloning into '/home/cpf/Desktop/openmc/vendor/gsl-lite'...
Cloning into '/home/cpf/Desktop/openmc/vendor/pugixml'...
Cloning into '/home/cpf/Desktop/openmc/vendor/xtensor'...
Cloning into '/home/cpf/Desktop/openmc/vendor/xtl'...
Submodule path 'vendor/fmt': checked out 'd141cdbeb0fb422a3fb7173b285fd38e0d1772dc'
Submodule path 'vendor/gsl-lite': checked out '913e86d49c6a1acca980f4e325378f9dc393493a'
Submodule path 'vendor/pugixml': checked out '41b6ff21c455865bb8ef67c5952b7f895b62bacc'
Submodule path 'vendor/xtensor': checked out '31acec1e90bbea6d4bc17af0710a123bd5da6689'
Submodule path 'vendor/xtl': checked out 'c19750fb1488369dc41f6069bc2b8446fc093e75'
-- Found pugixml: /usr/local/lib/cmake/pugixml (version 1.10)
-- Found fmt: /usr/local/lib/cmake/fmt (version 8.0.1)
-- Found xtensor: /usr/local/lib/cmake/xtensor (version 0.21.3)
-- Found gsl-lite: /usr/local/lib/cmake/gsl-lite (version 0.36.1)
-- Configuring done
-- Generating done
-- Build files have been written to: /home/cpf/Desktop/openmc/build
paulromano commented 2 years ago

The following lines draw my attention:

-- Found pugixml: /usr/local/lib/cmake/pugixml (version 1.10)
-- Found fmt: /usr/local/lib/cmake/fmt (version 8.0.1)
-- Found xtensor: /usr/local/lib/cmake/xtensor (version 0.21.3)
-- Found gsl-lite: /usr/local/lib/cmake/gsl-lite (version 0.36.1)

It looks like you have a prior installation of OpenMC that it is picking up these packages from, which apparently is causing some kind of conflict. I would try deleting the prior installation from /usr/local and trying again. Alternatively, you could try cmake -DCMAKE_IGNORE_PATH=/usr/local .., which might do the trick without having to remove the installation in /usr/local.

cfichtlscherer commented 2 years ago

@paulromano I removed all my old OpenMC installations. I still get the error at the end of the installation. The cmake output looks now like the following:

-- The C compiler identification is GNU 10.3.0
-- The CXX compiler identification is GNU 10.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- No build type selected, defaulting to RelWithDebInfo
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") 
-- Found PNG: /usr/lib/x86_64-linux-gnu/libpng.so (found version "1.6.37") 
-- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.
so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.6") found components: C HL 
-- Found OpenMP_C: -fopenmp (found version "4.5") 
-- Found OpenMP_CXX: -fopenmp (found version "4.5") 
-- Found OpenMP: TRUE (found version "4.5")  
-- OpenMC C++ flags: -fopenmp
-- OpenMC Linker flags: -fopenmp
-- Found Git: /usr/bin/git (found version "2.30.2") 
-- Submodule update
-- Did not find pugixml, will use submodule instead
-- Found fmt: /usr/lib/x86_64-linux-gnu/cmake/fmt (version 7.1.3)
-- Did not find xtensor, will use submodule instead
-- xtl v0.6.13
-- Building xtensor v0.21.3
-- Found xtl v0.6.13
-- Did not find gsl-lite, will use submodule instead
-- Project 'gsl_lite', package 'gsl-lite' version: '0.36.1'
-- Configuring done
-- Generating done
-- Build files have been written to: /home/cpf/Desktop/openmc/build

I tried also the cmake -DCMAKE_IGNORE_PATH=/usr/local .. command with the same error. The output here was:

-- The C compiler identification is GNU 10.3.0
-- The CXX compiler identification is GNU 10.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- No build type selected, defaulting to RelWithDebInfo
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") 
-- Found PNG: /usr/lib/x86_64-linux-gnu/libpng.so (found version "1.6.37") 
-- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.10.6") found components: C HL 
-- Found OpenMP_C: -fopenmp (found version "4.5") 
-- Found OpenMP_CXX: -fopenmp (found version "4.5") 
-- Found OpenMP: TRUE (found version "4.5")  
-- OpenMC C++ flags: -fopenmp
-- OpenMC Linker flags: -fopenmp
-- Found Git: /usr/bin/git (found version "2.30.2") 
-- Submodule update
-- Did not find pugixml, will use submodule instead
-- Found fmt: /usr/lib/x86_64-linux-gnu/cmake/fmt (version 7.1.3)
-- Did not find xtensor, will use submodule instead
-- xtl v0.6.13
-- Building xtensor v0.21.3
-- Found xtl v0.6.13
-- Did not find gsl-lite, will use submodule instead
-- Project 'gsl_lite', package 'gsl-lite' version: '0.36.1'
-- Configuring done
-- Generating done
-- Build files have been written to: /home/cpf/Desktop/openmc/build
paulromano commented 2 years ago

That's strange. What operating system do you use? I see that you do have a system package installed for fmtlib:

-- Found fmt: /usr/lib/x86_64-linux-gnu/cmake/fmt (version 7.1.3)

Are the undefined reference errors exactly the same?

cfichtlscherer commented 2 years ago

Ubuntu 21.04 - t14s Laptop with AMD processor.

Yes, it seems that the error do somehow belong to fmt.

/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::detail::dragonbox::decimal_fp<float> fmt::v8::detail::dragonbox::to_decimal<float>(float)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `int fmt::v8::detail::snprintf_float<double>(double, int, fmt::v8::detail::float_specs, fmt::v8::detail::buffer<char>&)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::detail::dragonbox::decimal_fp<double> fmt::v8::detail::dragonbox::to_decimal<double>(double)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::detail::basic_data<void>::left_padding_shifts'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `char fmt::v8::detail::decimal_point_impl<char>(fmt::v8::detail::locale_ref)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::format_error::~format_error()'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `typeinfo for fmt::v8::format_error'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `int fmt::v8::detail::format_float<long double>(long double, int, fmt::v8::detail::float_specs, fmt::v8::detail::buffer<char>&)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `int fmt::v8::detail::format_float<double>(double, int, fmt::v8::detail::float_specs, fmt::v8::detail::buffer<char>&)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::vprint(fmt::v8::basic_string_view<char>, fmt::v8::basic_format_args<fmt::v8::basic_format_context<fmt::v8::appender, char> >)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::detail::basic_data<void>::digits'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `int fmt::v8::detail::snprintf_float<long double>(long double, int, fmt::v8::detail::float_specs, fmt::v8::detail::buffer<char>&)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::detail::thousands_sep_result<char> fmt::v8::detail::thousands_sep_impl<char>(fmt::v8::detail::locale_ref)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::detail::basic_data<void>::hex_digits'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `std::locale fmt::v8::detail::locale_ref::get<std::locale>() const'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::detail::basic_data<void>::signs'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::detail::basic_data<void>::prefixes'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::detail::error_handler::on_error(char const*)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `vtable for fmt::v8::format_error'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::vprint(_IO_FILE*, fmt::v8::basic_string_view<char>, fmt::v8::basic_format_args<fmt::v8::basic_format_context<fmt::v8::appender, char> >)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::vformat[abi:cxx11](fmt::v8::basic_string_view<char>, fmt::v8::basic_format_args<fmt::v8::basic_format_context<fmt::v8::appender, char> >)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::detail::basic_data<void>::right_padding_shifts'
collect2: error: ld returned 1 exit status
make[2]: *** [CMakeFiles/openmc.dir/build.make:109: bin/openmc] Error 1
make[1]: *** [CMakeFiles/Makefile2:215: CMakeFiles/openmc.dir/all] Error 2
make: *** [Makefile:136: all] Error 2
paulromano commented 2 years ago

Can you run make VERBOSE=1 and copy-paste the link command that is failing? It seems like it's not linking against the fmt library when building libopenmc.

cfichtlscherer commented 2 years ago

Yes, when I run make VERBOSE=1 I get this output (sorry very long but I don't see anything failing there - with exception of the error message at the end)

/opt/cmake-3.23.1-linux-x86_64/bin/cmake -S/home/cpf/Desktop/openmc -B/home/cpf/Desktop/openmc/build --check-build-system CMakeFiles/Makefile.cmake 0
/opt/cmake-3.23.1-linux-x86_64/bin/cmake -E cmake_progress_start /home/cpf/Desktop/openmc/build/CMakeFiles /home/cpf/Desktop/openmc/build//CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[1]: Entering directory '/home/cpf/Desktop/openmc/build'
make  -f vendor/pugixml/CMakeFiles/pugixml.dir/build.make vendor/pugixml/CMakeFiles/pugixml.dir/depend
make[2]: Entering directory '/home/cpf/Desktop/openmc/build'
cd /home/cpf/Desktop/openmc/build && /opt/cmake-3.23.1-linux-x86_64/bin/cmake -E cmake_depends "Unix Makefiles" /home/cpf/Desktop/openmc /home/cpf/Desktop/openmc/vendor/pugixml /home/cpf/Desktop/openmc/build /home/cpf/Desktop/openmc/build/vendor/pugixml /home/cpf/Desktop/openmc/build/vendor/pugixml/CMakeFiles/pugixml.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/home/cpf/Desktop/openmc/build'
make  -f vendor/pugixml/CMakeFiles/pugixml.dir/build.make vendor/pugixml/CMakeFiles/pugixml.dir/build
make[2]: Entering directory '/home/cpf/Desktop/openmc/build'
[  1%] Building CXX object vendor/pugixml/CMakeFiles/pugixml.dir/src/pugixml.cpp.o
cd /home/cpf/Desktop/openmc/build/vendor/pugixml && /usr/bin/c++  -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -std=c++14 -MD -MT vendor/pugixml/CMakeFiles/pugixml.dir/src/pugixml.cpp.o -MF CMakeFiles/pugixml.dir/src/pugixml.cpp.o.d -o CMakeFiles/pugixml.dir/src/pugixml.cpp.o -c /home/cpf/Desktop/openmc/vendor/pugixml/src/pugixml.cpp
[  2%] Linking CXX static library ../../lib/libpugixml.a
cd /home/cpf/Desktop/openmc/build/vendor/pugixml && /opt/cmake-3.23.1-linux-x86_64/bin/cmake -P CMakeFiles/pugixml.dir/cmake_clean_target.cmake
cd /home/cpf/Desktop/openmc/build/vendor/pugixml && /opt/cmake-3.23.1-linux-x86_64/bin/cmake -E cmake_link_script CMakeFiles/pugixml.dir/link.txt --verbose=1
/usr/bin/ar qc ../../lib/libpugixml.a CMakeFiles/pugixml.dir/src/pugixml.cpp.o
/usr/bin/ranlib ../../lib/libpugixml.a
make[2]: Leaving directory '/home/cpf/Desktop/openmc/build'
[  2%] Built target pugixml
make  -f CMakeFiles/libopenmc.dir/build.make CMakeFiles/libopenmc.dir/depend
make[2]: Entering directory '/home/cpf/Desktop/openmc/build'
cd /home/cpf/Desktop/openmc/build && /opt/cmake-3.23.1-linux-x86_64/bin/cmake -E cmake_depends "Unix Makefiles" /home/cpf/Desktop/openmc /home/cpf/Desktop/openmc /home/cpf/Desktop/openmc/build /home/cpf/Desktop/openmc/build /home/cpf/Desktop/openmc/build/CMakeFiles/libopenmc.dir/DependInfo.cmake --color=
make[2]: Leaving directory '/home/cpf/Desktop/openmc/build'
make  -f CMakeFiles/libopenmc.dir/build.make CMakeFiles/libopenmc.dir/build
make[2]: Entering directory '/home/cpf/Desktop/openmc/build'
[  2%] Building CXX object CMakeFiles/libopenmc.dir/src/bank.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/bank.cpp.o -MF CMakeFiles/libopenmc.dir/src/bank.cpp.o.d -o CMakeFiles/libopenmc.dir/src/bank.cpp.o -c /home/cpf/Desktop/openmc/src/bank.cpp
[  3%] Building CXX object CMakeFiles/libopenmc.dir/src/boundary_condition.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/boundary_condition.cpp.o -MF CMakeFiles/libopenmc.dir/src/boundary_condition.cpp.o.d -o CMakeFiles/libopenmc.dir/src/boundary_condition.cpp.o -c /home/cpf/Desktop/openmc/src/boundary_condition.cpp
[  4%] Building CXX object CMakeFiles/libopenmc.dir/src/bremsstrahlung.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/bremsstrahlung.cpp.o -MF CMakeFiles/libopenmc.dir/src/bremsstrahlung.cpp.o.d -o CMakeFiles/libopenmc.dir/src/bremsstrahlung.cpp.o -c /home/cpf/Desktop/openmc/src/bremsstrahlung.cpp
[  5%] Building CXX object CMakeFiles/libopenmc.dir/src/dagmc.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/dagmc.cpp.o -MF CMakeFiles/libopenmc.dir/src/dagmc.cpp.o.d -o CMakeFiles/libopenmc.dir/src/dagmc.cpp.o -c /home/cpf/Desktop/openmc/src/dagmc.cpp
[  6%] Building CXX object CMakeFiles/libopenmc.dir/src/cell.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/cell.cpp.o -MF CMakeFiles/libopenmc.dir/src/cell.cpp.o.d -o CMakeFiles/libopenmc.dir/src/cell.cpp.o -c /home/cpf/Desktop/openmc/src/cell.cpp
[  7%] Building CXX object CMakeFiles/libopenmc.dir/src/cmfd_solver.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/cmfd_solver.cpp.o -MF CMakeFiles/libopenmc.dir/src/cmfd_solver.cpp.o.d -o CMakeFiles/libopenmc.dir/src/cmfd_solver.cpp.o -c /home/cpf/Desktop/openmc/src/cmfd_solver.cpp
[  8%] Building CXX object CMakeFiles/libopenmc.dir/src/cross_sections.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/cross_sections.cpp.o -MF CMakeFiles/libopenmc.dir/src/cross_sections.cpp.o.d -o CMakeFiles/libopenmc.dir/src/cross_sections.cpp.o -c /home/cpf/Desktop/openmc/src/cross_sections.cpp
[  9%] Building CXX object CMakeFiles/libopenmc.dir/src/distribution.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/distribution.cpp.o -MF CMakeFiles/libopenmc.dir/src/distribution.cpp.o.d -o CMakeFiles/libopenmc.dir/src/distribution.cpp.o -c /home/cpf/Desktop/openmc/src/distribution.cpp
[ 10%] Building CXX object CMakeFiles/libopenmc.dir/src/distribution_angle.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/distribution_angle.cpp.o -MF CMakeFiles/libopenmc.dir/src/distribution_angle.cpp.o.d -o CMakeFiles/libopenmc.dir/src/distribution_angle.cpp.o -c /home/cpf/Desktop/openmc/src/distribution_angle.cpp
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/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/distribution_energy.cpp.o -MF CMakeFiles/libopenmc.dir/src/distribution_energy.cpp.o.d -o CMakeFiles/libopenmc.dir/src/distribution_energy.cpp.o -c /home/cpf/Desktop/openmc/src/distribution_energy.cpp
[ 12%] Building CXX object CMakeFiles/libopenmc.dir/src/distribution_multi.cpp.o
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[ 13%] Building CXX object CMakeFiles/libopenmc.dir/src/distribution_spatial.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/distribution_spatial.cpp.o -MF CMakeFiles/libopenmc.dir/src/distribution_spatial.cpp.o.d -o CMakeFiles/libopenmc.dir/src/distribution_spatial.cpp.o -c /home/cpf/Desktop/openmc/src/distribution_spatial.cpp
[ 14%] Building CXX object CMakeFiles/libopenmc.dir/src/eigenvalue.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/eigenvalue.cpp.o -MF CMakeFiles/libopenmc.dir/src/eigenvalue.cpp.o.d -o CMakeFiles/libopenmc.dir/src/eigenvalue.cpp.o -c /home/cpf/Desktop/openmc/src/eigenvalue.cpp
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/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/event.cpp.o -MF CMakeFiles/libopenmc.dir/src/event.cpp.o.d -o CMakeFiles/libopenmc.dir/src/event.cpp.o -c /home/cpf/Desktop/openmc/src/event.cpp
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/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/initialize.cpp.o -MF CMakeFiles/libopenmc.dir/src/initialize.cpp.o.d -o CMakeFiles/libopenmc.dir/src/initialize.cpp.o -c /home/cpf/Desktop/openmc/src/initialize.cpp
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/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/finalize.cpp.o -MF CMakeFiles/libopenmc.dir/src/finalize.cpp.o.d -o CMakeFiles/libopenmc.dir/src/finalize.cpp.o -c /home/cpf/Desktop/openmc/src/finalize.cpp
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/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/geometry.cpp.o -MF CMakeFiles/libopenmc.dir/src/geometry.cpp.o.d -o CMakeFiles/libopenmc.dir/src/geometry.cpp.o -c /home/cpf/Desktop/openmc/src/geometry.cpp
[ 20%] Building CXX object CMakeFiles/libopenmc.dir/src/geometry_aux.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/geometry_aux.cpp.o -MF CMakeFiles/libopenmc.dir/src/geometry_aux.cpp.o.d -o CMakeFiles/libopenmc.dir/src/geometry_aux.cpp.o -c /home/cpf/Desktop/openmc/src/geometry_aux.cpp
[ 21%] Building CXX object CMakeFiles/libopenmc.dir/src/hdf5_interface.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/hdf5_interface.cpp.o -MF CMakeFiles/libopenmc.dir/src/hdf5_interface.cpp.o.d -o CMakeFiles/libopenmc.dir/src/hdf5_interface.cpp.o -c /home/cpf/Desktop/openmc/src/hdf5_interface.cpp
[ 22%] Building CXX object CMakeFiles/libopenmc.dir/src/lattice.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/lattice.cpp.o -MF CMakeFiles/libopenmc.dir/src/lattice.cpp.o.d -o CMakeFiles/libopenmc.dir/src/lattice.cpp.o -c /home/cpf/Desktop/openmc/src/lattice.cpp
[ 23%] Building CXX object CMakeFiles/libopenmc.dir/src/material.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/material.cpp.o -MF CMakeFiles/libopenmc.dir/src/material.cpp.o.d -o CMakeFiles/libopenmc.dir/src/material.cpp.o -c /home/cpf/Desktop/openmc/src/material.cpp
[ 25%] Building CXX object CMakeFiles/libopenmc.dir/src/math_functions.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/math_functions.cpp.o -MF CMakeFiles/libopenmc.dir/src/math_functions.cpp.o.d -o CMakeFiles/libopenmc.dir/src/math_functions.cpp.o -c /home/cpf/Desktop/openmc/src/math_functions.cpp
[ 26%] Building CXX object CMakeFiles/libopenmc.dir/src/mesh.cpp.o
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[ 27%] Building CXX object CMakeFiles/libopenmc.dir/src/message_passing.cpp.o
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[ 28%] Building CXX object CMakeFiles/libopenmc.dir/src/mgxs.cpp.o
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[ 29%] Building CXX object CMakeFiles/libopenmc.dir/src/mgxs_interface.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/mgxs_interface.cpp.o -MF CMakeFiles/libopenmc.dir/src/mgxs_interface.cpp.o.d -o CMakeFiles/libopenmc.dir/src/mgxs_interface.cpp.o -c /home/cpf/Desktop/openmc/src/mgxs_interface.cpp
[ 30%] Building CXX object CMakeFiles/libopenmc.dir/src/nuclide.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/nuclide.cpp.o -MF CMakeFiles/libopenmc.dir/src/nuclide.cpp.o.d -o CMakeFiles/libopenmc.dir/src/nuclide.cpp.o -c /home/cpf/Desktop/openmc/src/nuclide.cpp
[ 31%] Building CXX object CMakeFiles/libopenmc.dir/src/output.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/output.cpp.o -MF CMakeFiles/libopenmc.dir/src/output.cpp.o.d -o CMakeFiles/libopenmc.dir/src/output.cpp.o -c /home/cpf/Desktop/openmc/src/output.cpp
[ 32%] Building CXX object CMakeFiles/libopenmc.dir/src/particle.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/particle.cpp.o -MF CMakeFiles/libopenmc.dir/src/particle.cpp.o.d -o CMakeFiles/libopenmc.dir/src/particle.cpp.o -c /home/cpf/Desktop/openmc/src/particle.cpp
[ 33%] Building CXX object CMakeFiles/libopenmc.dir/src/particle_data.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/particle_data.cpp.o -MF CMakeFiles/libopenmc.dir/src/particle_data.cpp.o.d -o CMakeFiles/libopenmc.dir/src/particle_data.cpp.o -c /home/cpf/Desktop/openmc/src/particle_data.cpp
[ 34%] Building CXX object CMakeFiles/libopenmc.dir/src/particle_restart.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/particle_restart.cpp.o -MF CMakeFiles/libopenmc.dir/src/particle_restart.cpp.o.d -o CMakeFiles/libopenmc.dir/src/particle_restart.cpp.o -c /home/cpf/Desktop/openmc/src/particle_restart.cpp
[ 35%] Building CXX object CMakeFiles/libopenmc.dir/src/photon.cpp.o
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[ 36%] Building CXX object CMakeFiles/libopenmc.dir/src/physics.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/physics.cpp.o -MF CMakeFiles/libopenmc.dir/src/physics.cpp.o.d -o CMakeFiles/libopenmc.dir/src/physics.cpp.o -c /home/cpf/Desktop/openmc/src/physics.cpp
[ 36%] Building CXX object CMakeFiles/libopenmc.dir/src/physics_common.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/physics_common.cpp.o -MF CMakeFiles/libopenmc.dir/src/physics_common.cpp.o.d -o CMakeFiles/libopenmc.dir/src/physics_common.cpp.o -c /home/cpf/Desktop/openmc/src/physics_common.cpp
[ 37%] Building CXX object CMakeFiles/libopenmc.dir/src/physics_mg.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/physics_mg.cpp.o -MF CMakeFiles/libopenmc.dir/src/physics_mg.cpp.o.d -o CMakeFiles/libopenmc.dir/src/physics_mg.cpp.o -c /home/cpf/Desktop/openmc/src/physics_mg.cpp
[ 38%] Building CXX object CMakeFiles/libopenmc.dir/src/plot.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/plot.cpp.o -MF CMakeFiles/libopenmc.dir/src/plot.cpp.o.d -o CMakeFiles/libopenmc.dir/src/plot.cpp.o -c /home/cpf/Desktop/openmc/src/plot.cpp
[ 39%] Building CXX object CMakeFiles/libopenmc.dir/src/position.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/position.cpp.o -MF CMakeFiles/libopenmc.dir/src/position.cpp.o.d -o CMakeFiles/libopenmc.dir/src/position.cpp.o -c /home/cpf/Desktop/openmc/src/position.cpp
[ 40%] Building CXX object CMakeFiles/libopenmc.dir/src/progress_bar.cpp.o
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[ 41%] Building CXX object CMakeFiles/libopenmc.dir/src/random_dist.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/random_dist.cpp.o -MF CMakeFiles/libopenmc.dir/src/random_dist.cpp.o.d -o CMakeFiles/libopenmc.dir/src/random_dist.cpp.o -c /home/cpf/Desktop/openmc/src/random_dist.cpp
[ 42%] Building CXX object CMakeFiles/libopenmc.dir/src/random_lcg.cpp.o
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[ 43%] Building CXX object CMakeFiles/libopenmc.dir/src/reaction.cpp.o
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[ 44%] Building CXX object CMakeFiles/libopenmc.dir/src/reaction_product.cpp.o
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[ 45%] Building CXX object CMakeFiles/libopenmc.dir/src/scattdata.cpp.o
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[ 46%] Building CXX object CMakeFiles/libopenmc.dir/src/secondary_correlated.cpp.o
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[ 47%] Building CXX object CMakeFiles/libopenmc.dir/src/secondary_kalbach.cpp.o
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[ 48%] Building CXX object CMakeFiles/libopenmc.dir/src/secondary_nbody.cpp.o
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/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/secondary_thermal.cpp.o -MF CMakeFiles/libopenmc.dir/src/secondary_thermal.cpp.o.d -o CMakeFiles/libopenmc.dir/src/secondary_thermal.cpp.o -c /home/cpf/Desktop/openmc/src/secondary_thermal.cpp
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/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/settings.cpp.o -MF CMakeFiles/libopenmc.dir/src/settings.cpp.o.d -o CMakeFiles/libopenmc.dir/src/settings.cpp.o -c /home/cpf/Desktop/openmc/src/settings.cpp
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[ 54%] Building CXX object CMakeFiles/libopenmc.dir/src/source.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/source.cpp.o -MF CMakeFiles/libopenmc.dir/src/source.cpp.o.d -o CMakeFiles/libopenmc.dir/src/source.cpp.o -c /home/cpf/Desktop/openmc/src/source.cpp
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/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/string_utils.cpp.o -MF CMakeFiles/libopenmc.dir/src/string_utils.cpp.o.d -o CMakeFiles/libopenmc.dir/src/string_utils.cpp.o -c /home/cpf/Desktop/openmc/src/string_utils.cpp
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[ 57%] Building CXX object CMakeFiles/libopenmc.dir/src/surface.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/surface.cpp.o -MF CMakeFiles/libopenmc.dir/src/surface.cpp.o.d -o CMakeFiles/libopenmc.dir/src/surface.cpp.o -c /home/cpf/Desktop/openmc/src/surface.cpp
[ 58%] Building CXX object CMakeFiles/libopenmc.dir/src/tallies/derivative.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/tallies/derivative.cpp.o -MF CMakeFiles/libopenmc.dir/src/tallies/derivative.cpp.o.d -o CMakeFiles/libopenmc.dir/src/tallies/derivative.cpp.o -c /home/cpf/Desktop/openmc/src/tallies/derivative.cpp
[ 59%] Building CXX object CMakeFiles/libopenmc.dir/src/tallies/filter.cpp.o
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[ 60%] Building CXX object CMakeFiles/libopenmc.dir/src/tallies/filter_azimuthal.cpp.o
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[ 61%] Building CXX object CMakeFiles/libopenmc.dir/src/tallies/filter_cellborn.cpp.o
/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGIT_SHA1=\"85cf539db32965cef02c7f6e1c8ad41d207653cf\" -DGSL_THROW_ON_CONTRACT_VIOLATION -DUSE_LIBPNG -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -Dlibopenmc_EXPORTS -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/libopenmc.dir/src/tallies/filter_cellborn.cpp.o -MF CMakeFiles/libopenmc.dir/src/tallies/filter_cellborn.cpp.o.d -o CMakeFiles/libopenmc.dir/src/tallies/filter_cellborn.cpp.o -c /home/cpf/Desktop/openmc/src/tallies/filter_cellborn.cpp
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[ 63%] Building CXX object CMakeFiles/libopenmc.dir/src/tallies/filter_cell.cpp.o
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[ 64%] Building CXX object CMakeFiles/libopenmc.dir/src/tallies/filter_cell_instance.cpp.o
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[ 66%] Building CXX object CMakeFiles/libopenmc.dir/src/tallies/filter_distribcell.cpp.o
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[ 69%] Building CXX object CMakeFiles/libopenmc.dir/src/tallies/filter_collision.cpp.o
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Copying libopenmc to Python module directory
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/usr/bin/c++ -DFMT_LOCALE -DFMT_SHARED -DGSL_THROW_ON_CONTRACT_VIOLATION -Dgsl_CONFIG_ALLOWS_NONSTRICT_SPAN_COMPARISON=1 -Dgsl_CONFIG_DEFAULTS_VERSION=1 -I/home/cpf/Desktop/openmc/build/include -I/home/cpf/Desktop/openmc/include -I/usr/include/hdf5/serial -I/home/cpf/Desktop/openmc/vendor/xtensor/include -I/home/cpf/Desktop/openmc/vendor/xtl/include -I/home/cpf/Desktop/openmc/vendor/gsl-lite/include -I/home/cpf/Desktop/openmc/vendor/pugixml/src -O2 -g -DNDEBUG -fPIE -fopenmp -MD -MT CMakeFiles/openmc.dir/src/main.cpp.o -MF CMakeFiles/openmc.dir/src/main.cpp.o.d -o CMakeFiles/openmc.dir/src/main.cpp.o -c /home/cpf/Desktop/openmc/src/main.cpp
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/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::detail::dragonbox::decimal_fp<float> fmt::v8::detail::dragonbox::to_decimal<float>(float)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `int fmt::v8::detail::snprintf_float<double>(double, int, fmt::v8::detail::float_specs, fmt::v8::detail::buffer<char>&)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::detail::dragonbox::decimal_fp<double> fmt::v8::detail::dragonbox::to_decimal<double>(double)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::detail::basic_data<void>::left_padding_shifts'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `char fmt::v8::detail::decimal_point_impl<char>(fmt::v8::detail::locale_ref)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::format_error::~format_error()'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `typeinfo for fmt::v8::format_error'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `int fmt::v8::detail::format_float<long double>(long double, int, fmt::v8::detail::float_specs, fmt::v8::detail::buffer<char>&)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `int fmt::v8::detail::format_float<double>(double, int, fmt::v8::detail::float_specs, fmt::v8::detail::buffer<char>&)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::vprint(fmt::v8::basic_string_view<char>, fmt::v8::basic_format_args<fmt::v8::basic_format_context<fmt::v8::appender, char> >)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::detail::basic_data<void>::digits'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `int fmt::v8::detail::snprintf_float<long double>(long double, int, fmt::v8::detail::float_specs, fmt::v8::detail::buffer<char>&)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::detail::thousands_sep_result<char> fmt::v8::detail::thousands_sep_impl<char>(fmt::v8::detail::locale_ref)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::detail::basic_data<void>::hex_digits'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `std::locale fmt::v8::detail::locale_ref::get<std::locale>() const'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::detail::basic_data<void>::signs'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::detail::basic_data<void>::prefixes'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::detail::error_handler::on_error(char const*)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `vtable for fmt::v8::format_error'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::vprint(_IO_FILE*, fmt::v8::basic_string_view<char>, fmt::v8::basic_format_args<fmt::v8::basic_format_context<fmt::v8::appender, char> >)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::vformat[abi:cxx11](fmt::v8::basic_string_view<char>, fmt::v8::basic_format_args<fmt::v8::basic_format_context<fmt::v8::appender, char> >)'
/usr/bin/ld: lib/libopenmc.so: undefined reference to `fmt::v8::detail::basic_data<void>::right_padding_shifts'
collect2: error: ld returned 1 exit status
make[2]: *** [CMakeFiles/openmc.dir/build.make:109: bin/openmc] Error 1
make[2]: Leaving directory '/home/cpf/Desktop/openmc/build'
make[1]: *** [CMakeFiles/Makefile2:215: CMakeFiles/openmc.dir/all] Error 2
make[1]: Leaving directory '/home/cpf/Desktop/openmc/build'
make: *** [Makefile:136: all] Error 2
cfichtlscherer commented 2 years ago

@Paul you have judged very well. Its a problem of the fmtlib package.

A dirty repair for me was to replace 

find_package_write_status(fmt)                                            
if (NOT fmt_FOUND)                                                        
  set(FMT_INSTALL ON CACHE BOOL "Generate the install target.")           
  add_subdirectory(vendor/fmt)                                            
endif()

by 

find_package(fmt REQUIRED)                
include_directories(${fmt_INCLUDE_DIRS})  
target_link_libraries(fmt::fmt)

not really sure what is going on here, but now its working again.

cfichtlscherer commented 2 years ago

Thanks again @paulromano for helping me here! Amazing user support!