Additional component-plans

rbossy commented 6 years ago

There here: https://github.com/openminted/alvis-docker/tree/master/openminted-components/segmenter/test-data/plans

OMTD_GeniaTagger.plan: segmentation, POS-tagging, lemmatization, NER (DNA, cell_line, cell_type, PROTEIN).
OMTD_RDFProjector.plan and its resource Wheat-Trait-Ontology-1.2.xrdf: segmentation, POS-tagging, lemmatization, NER (phenotype). Wherever the resource is located, the path should be set right at line 15.
OMTD_ToMap.plan and its resource OntoBiotope_BioNLP-ST-2016-Habitat.tomap: segmentation, POS-tagging, lemmatization, NER (habitat). Wherever the resource is located, the path should be set at line 19.
OMTD_RegExp.plan: juste regular expression matching. Accepts a parameter named pattern which is a regular expression in Java syntax.

@mandiayba

mandiayba commented 6 years ago

Have the following error, don't know why ?

[2018-05-11 09:23:10.489][alvisnlp] finished loading /alvisnlp/OMTD_ToMap.plan
[2018-05-11 09:23:10.490][alvisnlp] setting input to '/alvisnlp/data/corpus' in OMTD_ToMap
[2018-05-11 09:23:10.495][alvisnlp] SEVERE unset mandatory parameter: tt parFile
[2018-05-11 09:23:10.496][alvisnlp] SEVERE error in plan: some mandatory parameters are not set

rbossy commented 6 years ago

Replaced TreeTagger with GeniaTagger in commit fe1fa48feff160906ef5d45dbf123dd3149d51ea

@mandiayba

mandiayba commented 6 years ago

the plans work fine

openminted / alvis-docker

Additional component-plans #11