OpenMSIModel uses the GEMD (Graphical Expression of Material Data) format to interact with generalized laboratory, analysis, and computational materials data.
(I'm not yet familiar with the standard processes for contributions to this repository, but I very much would like to learn and conform to them!)
This adds a CytoscapeGraphWidget for graphml files. In one specific case, this is how I used it:
import openmsimodel.graph.helpers as helpers
helpers.CytoscapeGraphWidget.from_graphml("F086-R4C3.graphml")
The resultant display has a JSON viewer that is updated whenever a node is selected. It also includes some code that flattens GraphML nodes to better work with CytoscapeJS.
(I'm not yet familiar with the standard processes for contributions to this repository, but I very much would like to learn and conform to them!)
This adds a
CytoscapeGraphWidgetfor graphml files. In one specific case, this is how I used it:The resultant display has a JSON viewer that is updated whenever a node is selected. It also includes some code that flattens GraphML nodes to better work with CytoscapeJS.