Closed bendhouseart closed 4 months ago
@bendhouseart Thanks for moving the discussion here. To be clear, the issue here is more apparent in the last frames of the image, where you'll notice the image center after conversion to Nifti/Bids is much darker than the surrounding noise. However, I'd still like to verify whether this issue occurs just for me, or if it is apparent for the developers at PET2BIDS as well.
@mnoergaard checked some of this - one issue seems to be ecat 6x but our doc says we support ecat 7+ - so I'm going to recheck some aspect, but do not intend to support older ecat
Matlab fix applied here -> https://github.com/openneuropet/PET2BIDS/commit/9beee53b926644455b68481101f3831c58e089c5
@bendhouseart silly me, the matlab code does something much simpler ... read data as int16 and output as int16 ; what the out from your python, float?
great ! fixed :-) I also found someone who is giving us a phantom with such 'fun' data
By the way, I've had a chance to use this and it seems to be working great! Thanks for all the hard work!
Originally posted by @noahg-neuroimage in https://github.com/openneuropet/PET2BIDS/issues/268#issuecomment-1952831653