PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side files like .e.g excel sheets -- paper @JOSS https://doi.org/10.21105/joss.06067
Describe the bug
pypet2bids crashes when bad input values are present in a blood spreadsheet.
To Reproduce
Include a nonsense/non-pythonic datatype in a spreadsheet column and read it in with the --metadata-path argument in dcm2niix4pet. e.g. #DIV/0!
Expected behaviour
Conversion completes and outputs a blood tsv, sidecar, etc with an empty value for the entity instead of raising the following error:
*pypet2bids/helper_funictions.py, line 117, in flatten_series
raise Exception(f"Invalid Series: {series}")
Exception: Invalid Series: 0 NaN
Desktop (please complete the following information):
Describe the bug pypet2bids crashes when bad input values are present in a blood spreadsheet.
To Reproduce Include a nonsense/non-pythonic datatype in a spreadsheet column and read it in with the --metadata-path argument in dcm2niix4pet. e.g.
#DIV/0!Expected behaviour Conversion completes and outputs a blood tsv, sidecar, etc with an empty value for the entity instead of raising the following error:
Desktop (please complete the following information):