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PET2BIDS
PET2BIDS helps you convert your PET data into BIDS! raw PET scanner files (e.g. ecat, dicom) and additional side files like .e.g excel sheets -- paper @JOSS https://doi.org/10.21105/joss.06067
https://pet2bids.readthedocs.io
MIT License
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added small script to update ecat mainheader with, bump version
#270
bendhouseart
closed
6 months ago
0
very small fix for tsv spreadsheets
#269
bendhouseart
closed
7 months ago
0
[Ecat2Nii] Only apply ECAT_CALIBRATION_FACTOR if it has not already b…
#268
noahg-neuroimage
closed
6 months ago
32
AttributeError: 'DummyFile' object has no attribute 'flush'
#267
dlevitas
closed
7 months ago
1
255 externalize function
#266
bendhouseart
closed
7 months ago
0
Shape using number of subheaders rather than number frames from main …
#265
noahg-neuroimage
closed
6 months ago
6
[ecatpet2bids] Specify starting frame when header and dataframe size mismatch
#264
noahg-neuroimage
closed
2 months ago
8
[Telementry] Add tracking of code usage
#263
bendhouseart
opened
7 months ago
1
Externalizing update PET json's
#262
bendhouseart
closed
7 months ago
1
Add Instructions for Users to Run Tests & Add Easily Retrievable Test Data
#261
bendhouseart
closed
7 months ago
0
added entity flags for trc, rec, run and full filename support
#260
bendhouseart
closed
7 months ago
0
Switch phantoms to s3, update CI, fix bug with updatepetjson.m on GE dicoms
#259
bendhouseart
closed
7 months ago
0
added entrypoint for updating a json from a pet dicom file
#258
bendhouseart
closed
7 months ago
0
fix-rtd-formatting
#257
bendhouseart
closed
7 months ago
0
update to poetry based install of requirements
#256
bendhouseart
closed
8 months ago
0
externalize function
#255
CPernet
closed
7 months ago
2
Update README.md
#254
agt24
closed
8 months ago
0
Updating Python Installation Instructions
#253
bendhouseart
closed
8 months ago
0
Add read the docs preview on pr
#252
bendhouseart
closed
8 months ago
1
added preview for rtd build
#251
bendhouseart
closed
8 months ago
0
[JOSS] Python API method documentation lacking
#250
adswa
closed
7 months ago
2
Installation instruction: duplication in the docs
#249
adswa
closed
7 months ago
1
[JOSS] Suggestion: Streamline Python installation a bit more
#248
adswa
closed
8 months ago
2
[JOSS] Suggestion: Consider adding instructions to run tests
#247
adswa
closed
7 months ago
1
Update canon phantoms
#246
bendhouseart
closed
7 months ago
1
non-PET dicoms
#245
bilgelm
opened
9 months ago
0
[Update branch] 236 joss review article comments
#244
bendhouseart
closed
3 months ago
1
236-joss-review-article-comments
#243
bendhouseart
closed
9 months ago
1
Bug fix: enable json sidecar generation for older dcm2niix versions
#242
bilgelm
closed
9 months ago
0
Update validation
#241
bendhouseart
closed
2 months ago
0
bumped up version of pytest for ezBIDS
#240
bendhouseart
closed
9 months ago
1
pypet2bids limits pytest verison
#239
dlevitas
closed
9 months ago
5
Bug fix: enable dcm2niix json sidecar generation
#238
bilgelm
closed
9 months ago
1
Tested previously failing phantoms, pass now.
#237
bendhouseart
closed
9 months ago
1
[JOSS review] Article comments
#236
nbeliy
closed
6 months ago
37
ENH: convert defacing workflow to PET App on brainlife
#235
mnoergaard
closed
9 months ago
0
ENH: test and push docker part to dockerhub
#234
mnoergaard
closed
9 months ago
0
DOC: improve documentation with readthedocs
#233
mnoergaard
closed
9 months ago
0
ENH: visualization of defacing procedure
#232
mnoergaard
closed
9 months ago
0
BUG: refactor of workflow to accommodate datasets with runs
#231
mnoergaard
closed
9 months ago
0
Convert msec to sec for ECAT to BIDS json
#230
bilgelm
closed
9 months ago
2
added check for a default config file and template
#229
bendhouseart
closed
9 months ago
0
silenced extra warnings, checking spreadsheet inputs too
#228
bendhouseart
closed
11 months ago
0
[BUG] pypet2bids collects additional values from spreadsheet that DNE; csv
#227
bendhouseart
closed
9 months ago
4
Update get_recon_method.m
#226
fishpm
closed
12 months ago
0
[ENH] Convert Boolean like Values to Python Type Bools
#225
bendhouseart
closed
12 months ago
0
[Feature] Update Spreadsheet Documentation Tips/Tricks/Examples
#224
bendhouseart
opened
1 year ago
1
Several small suggestions
#223
mathesong
closed
1 year ago
0
Update README.md
#222
CPernet
closed
1 year ago
0
Update contributors.md
#221
CPernet
closed
1 year ago
1
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