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openpharma / staged.dependencies

R package to implement development stages for package development
https://openpharma.github.io/staged.dependencies/
MIT License
12 stars 3 forks source link

Fix version check workflow #153

Closed cicdguy closed 2 years ago

cicdguy commented 2 years ago

Encountered a bug in the check version workflow. Fix is here.

github-actions[bot] commented 2 years ago

PII Check

Presidio found potential PII data in the following files:

``` ./NEWS.md 1:3 0.5 URL 3:3 0.5 URL 8:23 0.85 DATE_TIME 8:3 0.5 URL 17:19 0.5 URL 21:4 0.5 URL 28:12 0.5 URL 29:33 0.6 IP_ADDRESS 30:54 0.5 URL ./LICENSE 3:15 0.85 DATE_TIME ./DESCRIPTION 1:10 0.5 URL 6:40 1.0 EMAIL_ADDRESS 6:21 0.85 PERSON 6:55 0.5 URL 7:43 1.0 EMAIL_ADDRESS 7:25 0.85 PERSON 7:54 0.5 URL 7:68 0.5 URL 8:41 1.0 EMAIL_ADDRESS 8:57 0.5 URL ./_pkgdown.yml 1:6 0.95 URL 10:13 0.6 URL ./staged.dependencies.Rproj 20:36 0.5 URL ./.gitignore 1:1 0.5 URL ./renv.lock 7:17 0.95 URL 12:6 0.3 US_DRIVER_LICENSE 13:19 0.3 US_DRIVER_LICENSE 119:19 0.85 DATE_TIME 350:19 0.6 IP_ADDRESS 360:32 1.0 MEDICAL_LICENSE 427:19 0.6 IP_ADDRESS ./README.md 1:64 0.6 URL 1:137 0.5 URL 5:6 0.5 URL 14:71 0.5 URL 32:18 0.5 URL 35:88 0.6 IP_ADDRESS 35:6 0.5 URL 36:54 0.6 IP_ADDRESS 36:66 0.6 IP_ADDRESS 36:85 0.5 URL 41:59 0.6 URL 41:221 0.5 URL 48:49 0.6 URL 48:1 0.5 URL 49:49 0.6 URL 49:1 0.5 URL 51:3 0.5 URL 52:6 0.6 URL 53:6 0.6 URL 71:3 0.5 URL 72:6 0.6 URL 73:6 0.6 URL 82:25 0.5 URL 84:50 0.5 URL 96:68 0.6 URL 120:2 0.5 URL 121:58 0.5 URL 124:40 0.5 URL 142:35 0.5 URL 148:79 0.5 URL 150:13 0.5 URL 164:9 0.6 URL 166:9 0.6 URL 170:9 0.6 URL 172:9 0.6 URL 175:20 0.5 URL 176:9 0.6 URL 204:67 0.6 IP_ADDRESS 204:5 0.5 URL 208:41 0.85 PERSON 208:7 0.6 IP_ADDRESS 211:22 0.6 IP_ADDRESS 225:112 0.6 URL 230:1 0.6 URL 231:1 0.6 URL 232:1 0.6 URL 233:1 0.6 URL 234:1 0.6 URL 235:1 0.6 URL 237:79 0.5 URL 242:16 0.6 IP_ADDRESS 243:17 0.6 IP_ADDRESS 244:18 0.6 IP_ADDRESS 244:1 0.5 URL 245:15 0.6 IP_ADDRESS 245:1 0.5 URL 246:20 0.6 IP_ADDRESS 247:23 0.6 IP_ADDRESS ./.github/workflows/docs.yaml 31:31 0.5 URL 33:30 0.5 URL ./.github/workflows/check.yaml 15:31 0.5 URL 18:31 0.5 URL 20:30 0.5 URL 26:31 0.5 URL 28:30 0.5 URL 31:31 0.5 URL 33:30 0.5 URL 35:11 0.85 PERSON 36:31 0.5 URL 40:31 0.5 URL 43:31 0.5 URL 47:18 0.5 URL 47:45 0.5 URL 48:27 0.5 URL 48:54 0.5 URL 53:21 0.5 URL 57:18 0.6 IP_ADDRESS 58:18 0.5 URL 59:24 0.5 URL 60:31 0.5 URL 65:19 0.5 URL 67:45 0.5 URL ./.github/workflows/release.yaml 13:31 0.5 URL 15:30 0.5 URL 19:31 0.5 URL 21:30 0.5 URL 23:26 0.85 PERSON 24:31 0.5 URL ./tests/testthat.R 2:9 0.5 URL 4:13 0.5 URL ./tests/testthat/test-utils.R 4:24 0.5 URL 6:5 0.5 URL 12:24 0.5 URL 14:5 0.5 URL 49:30 0.5 URL 49:60 0.5 URL 50:8 0.5 URL 57:30 0.5 URL 57:58 0.5 URL 63:34 0.5 URL 63:62 0.5 URL 67:3 0.5 URL ./tests/testthat/test-dependencies.R 4:68 0.5 URL 4:107 0.5 URL 6:21 0.5 URL 10:89 0.6 URL 10:63 0.5 URL 12:5 0.5 URL 13:20 0.5 URL 16:17 0.6 URL 22:14 0.6 IP_ADDRESS 23:85 0.85 LOCATION 23:7 0.6 IP_ADDRESS 25:9 0.6 IP_ADDRESS 25:21 0.5 URL 26:33 0.6 IP_ADDRESS 31:10 0.6 IP_ADDRESS 33:25 0.5 URL 34:5 0.6 IP_ADDRESS 34:16 0.5 URL 34:44 0.5 URL 35:8 0.6 IP_ADDRESS 36:59 0.95 URL 36:8 0.6 IP_ADDRESS 48:42 0.5 URL 51:7 0.5 URL 52:27 0.5 URL 53:73 0.5 URL 59:36 0.85 DATE_TIME 59:39 0.85 DATE_TIME 59:42 0.85 DATE_TIME 61:18 0.6 IP_ADDRESS 63:21 0.6 URL 68:18 0.6 IP_ADDRESS 84:5 0.6 IP_ADDRESS 85:15 0.5 URL 87:22 0.85 LOCATION 88:17 0.5 URL 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87:45 0.5 URL 89:5 0.5 URL 89:74 0.5 URL 90:26 0.6 URL 90:48 0.6 URL 92:33 0.5 URL 103:25 0.5 URL 104:17 0.3 US_DRIVER_LICENSE 104:23 0.3 US_DRIVER_LICENSE 104:29 0.3 US_DRIVER_LICENSE 104:35 0.3 US_DRIVER_LICENSE 104:41 0.3 US_DRIVER_LICENSE 104:47 0.3 US_DRIVER_LICENSE 104:53 0.3 US_DRIVER_LICENSE 105:26 0.85 PERSON 107:32 0.85 DATE_TIME 113:9 0.3 US_DRIVER_LICENSE 113:27 0.3 US_DRIVER_LICENSE 114:9 0.3 US_DRIVER_LICENSE 114:27 0.3 US_DRIVER_LICENSE 115:9 0.3 US_DRIVER_LICENSE 115:27 0.3 US_DRIVER_LICENSE 118:9 0.3 US_DRIVER_LICENSE 118:27 0.3 US_DRIVER_LICENSE 134:41 0.6 URL 147:10 0.6 IP_ADDRESS 154:7 0.5 URL 155:21 0.5 URL 157:31 0.5 URL 158:31 0.5 URL 168:51 0.5 URL 169:51 0.5 URL 177:7 0.5 URL 178:21 0.5 URL 192:7 0.5 URL 193:21 0.5 URL 195:31 0.5 URL 196:31 0.5 URL 206:49 0.5 URL ./tests/testthat/setup-storagedir_repos.R 1:52 0.6 URL 9:13 1.0 EMAIL_ADDRESS 9:17 0.5 URL 9:39 0.5 URL 10:13 1.0 EMAIL_ADDRESS 10:17 0.5 URL 10:39 0.5 URL 11:13 1.0 EMAIL_ADDRESS 11:17 0.5 URL 11:39 0.5 URL 12:13 1.0 EMAIL_ADDRESS 12:17 0.5 URL 12:39 0.5 URL 13:13 1.0 EMAIL_ADDRESS 13:17 0.5 URL 13:39 0.5 URL 14:13 1.0 EMAIL_ADDRESS 14:17 0.5 URL 14:39 0.5 URL 15:18 0.5 URL 18:11 0.5 URL 22:39 0.5 URL 33:64 0.5 URL 35:24 0.6 IP_ADDRESS 36:8 0.6 IP_ADDRESS 37:8 0.6 IP_ADDRESS 49:62 0.85 LOCATION 49:62 0.5 URL ./tests/testthat/test-git_tools.R 5:8 0.6 IP_ADDRESS 6:47 0.6 URL 6:5 0.5 URL 8:31 0.5 URL 11:42 0.6 URL 18:39 0.95 URL 19:6 0.6 URL 29:5 0.5 URL 31:36 0.6 URL 40:32 0.6 URL 46:35 0.6 URL 57:10 0.6 IP_ADDRESS 59:34 0.6 URL ./man/check_downstream_job.Rd 13:59 0.6 URL 13:43 0.5 URL 14:62 0.6 URL 36:54 0.6 IP_ADDRESS 37:59 0.6 IP_ADDRESS 49:35 0.5 URL 50:35 0.5 URL ./man/get_all_external_dependencies.Rd 9:43 0.6 IP_ADDRESS 9:24 0.5 URL 9:45 0.5 URL 22:1 0.85 PERSON 22:34 0.5 URL 23:26 0.6 IP_ADDRESS 23:7 0.5 URL 23:28 0.5 URL 25:7 0.85 PERSON 45:96 0.6 IP_ADDRESS 63:14 0.6 IP_ADDRESS ./man/check_downstream.Rd 10:37 0.5 URL 35:54 0.6 IP_ADDRESS 37:48 0.6 IP_ADDRESS 59:7 0.5 URL ./man/build_check_install.Rd 5:1 0.85 LOCATION 7:1 0.85 PERSON 11:49 0.5 URL 34:43 0.85 PERSON 42:54 0.6 IP_ADDRESS 44:48 0.6 IP_ADDRESS 67:26 0.5 URL ./man/run_package_actions.Rd 20:33 0.5 URL 24:39 0.6 IP_ADDRESS 28:51 0.6 IP_ADDRESS 37:53 0.6 IP_ADDRESS 39:48 0.6 IP_ADDRESS 41:34 0.85 PERSON 50:46 0.6 IP_ADDRESS ./man/topological_sort.Rd 21:19 0.85 PERSON 24:22 0.6 IP_ADDRESS 24:3 0.5 URL 25:22 0.6 IP_ADDRESS 25:3 0.5 URL 26:22 0.6 IP_ADDRESS 26:3 0.5 URL ./man/install_deps_app.Rd 9:19 0.6 URL 26:34 0.6 URL 43:54 0.6 IP_ADDRESS 45:48 0.6 IP_ADDRESS 47:46 0.6 IP_ADDRESS 58:32 0.5 URL ./man/determine_ref.Rd 12:23 0.5 URL 37:3 0.5 URL 41:3 0.5 URL 46:20 0.5 URL 54:3 0.5 URL 60:3 0.5 URL 63:35 0.5 URL 66:37 0.5 URL 70:3 0.5 URL 74:3 0.5 URL ./man/install_deps_job.Rd 19:59 0.6 URL 19:43 0.5 URL 20:62 0.6 URL 45:54 0.6 IP_ADDRESS 46:59 0.6 IP_ADDRESS ./man/install_deps.Rd 34:54 0.6 IP_ADDRESS 36:48 0.6 IP_ADDRESS 46:46 0.6 IP_ADDRESS 49:7 0.5 URL ./man/install_repo_add_sha.Rd 12:46 0.6 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IP_ADDRESS 170:5 0.6 IP_ADDRESS 171:5 0.95 IP_ADDRESS 171:17 0.5 URL 172:17 0.5 URL 175:18 0.95 IP_ADDRESS 175:26 0.5 URL 180:10 0.6 IP_ADDRESS 185:24 0.85 URL 192:19 0.6 IP_ADDRESS 196:24 0.6 IP_ADDRESS 216:49 0.6 IP_ADDRESS 224:5 0.5 URL 239:18 0.6 IP_ADDRESS 240:31 0.6 IP_ADDRESS 248:18 0.6 IP_ADDRESS 249:33 0.6 IP_ADDRESS 250:22 0.6 IP_ADDRESS 262:16 0.6 IP_ADDRESS 262:19 0.6 IP_ADDRESS 263:18 0.5 URL 265:9 0.6 URL 265:104 0.3 US_DRIVER_LICENSE 270:22 0.6 IP_ADDRESS 279:29 0.6 IP_ADDRESS 281:16 0.6 IP_ADDRESS 290:8 0.6 IP_ADDRESS 290:10 0.5 URL 296:59 0.85 DATE_TIME 296:26 0.6 IP_ADDRESS ./R/zzz.R 2:36 0.5 URL 7:11 0.5 URL 11:5 0.5 URL 15:5 0.5 URL 23:13 0.5 URL 26:30 0.85 PERSON 28:3 0.5 URL 30:5 0.5 URL 31:8 0.6 URL 32:8 0.6 URL 35:14 0.85 LOCATION 35:20 0.5 URL 36:27 0.5 URL 37:36 0.5 URL ./R/dependencies.R 4:24 0.5 URL 5:61 0.85 URL 12:59 0.6 URL 12:43 0.5 URL 13:62 0.6 URL 20:25 0.5 URL 29:38 0.3 US_DRIVER_LICENSE 35:20 0.5 URL 45:46 0.6 IP_ADDRESS 53:61 0.6 URL 53:45 0.5 URL 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16:11 0.6 IP_ADDRESS 16:58 0.5 URL 20:17 0.6 IP_ADDRESS 23:14 0.6 IP_ADDRESS 25:11 0.6 IP_ADDRESS 25:59 0.5 URL ./renv/activate.R 11:15 0.5 URL 15:9 0.85 DATE_TIME 15:16 0.5 URL 25:14 0.5 URL 29:3 0.5 URL 33:11 0.5 URL 69:16 0.5 URL 75:14 0.5 URL 76:10 0.5 URL 81:25 0.5 URL 88:8 0.5 URL 89:8 0.6 URL 92:14 0.85 PERSON 92:14 0.5 URL 93:30 0.6 URL 94:25 0.5 URL 123:11 0.5 URL 135:7 0.6 URL 137:7 0.5 URL 143:10 0.6 IP_ADDRESS 143:12 0.5 URL 162:12 0.6 IP_ADDRESS 162:14 0.5 URL 187:18 0.5 URL 190:7 0.5 URL 200:11 0.5 URL 201:18 0.6 IP_ADDRESS 201:20 0.5 URL 232:13 0.85 URL 233:17 0.5 URL 258:16 0.5 URL 263:12 0.5 URL 267:25 0.5 URL 267:49 0.5 URL 268:46 0.85 URL 268:15 0.5 URL 269:26 0.6 IP_ADDRESS 269:15 0.5 URL 273:25 0.5 URL 273:49 0.5 URL 274:15 0.5 URL 274:46 0.5 URL 275:26 0.6 IP_ADDRESS 275:15 0.5 URL 278:52 0.85 PERSON 280:23 0.95 URL 280:12 0.85 URL 282:17 0.5 URL 303:5 0.5 URL 306:5 0.85 PERSON 307:16 0.5 URL 308:10 0.5 URL 315:9 0.5 URL 317:22 0.5 URL 329:39 0.85 LOCATION 329:22 0.5 URL 329:39 0.5 URL 330:26 0.85 LOCATION 335:17 0.5 URL 336:17 0.5 URL 339:31 0.5 URL 342:29 0.5 URL 346:10 0.5 URL 357:15 0.5 URL 358:10 0.5 URL 362:13 0.5 URL 374:35 0.85 LOCATION 378:38 0.6 URL 392:16 0.5 URL 398:26 0.85 PERSON 417:21 0.6 IP_ADDRESS 419:7 0.85 DATE_TIME 421:7 0.5 URL 422:7 0.5 URL 426:13 0.5 URL 461:41 0.5 URL 463:40 0.5 URL 490:13 0.5 URL 502:13 0.5 URL 503:10 0.5 URL 506:13 0.5 URL 507:10 0.5 URL 509:14 0.5 URL 519:27 0.6 IP_ADDRESS 532:14 0.85 DATE_TIME 533:53 0.85 DATE_TIME 533:17 0.6 IP_ADDRESS 534:17 0.6 IP_ADDRESS 551:10 0.6 IP_ADDRESS 565:9 0.6 IP_ADDRESS 574:16 0.5 URL 575:10 0.5 URL 576:7 0.85 LOCATION 579:13 0.5 URL 591:7 0.5 URL 599:10 0.85 LOCATION 599:10 0.5 URL 600:14 0.5 URL 604:16 0.5 URL 610:9 0.85 LOCATION 610:9 0.5 URL 613:7 0.5 URL 618:9 0.85 LOCATION 618:26 0.85 LOCATION 618:9 0.5 URL 635:14 0.5 URL 643:20 0.5 URL 651:8 0.5 URL 651:14 0.5 URL 657:16 0.6 IP_ADDRESS 663:15 0.6 IP_ADDRESS ./renv/settings.dcf 1:1 0.5 URL 2:1 0.5 URL 3:1 0.5 URL 4:1 0.5 URL 6:1 0.5 URL 7:1 0.5 URL ./inst/config.yaml 2:3 0.5 URL 4:25 0.5 URL 10:10 0.6 URL ```

github-actions[bot] commented 2 years ago

Code Coverage Summary

Filename                   Stmts    Miss  Cover    Missing
-----------------------  -------  ------  -------  -------------------------------------------------------------------------------------------------------
R/caching.R                  143       3  97.90%   68, 127-128
R/dependencies_app.R         117     117  0.00%    35-182
R/dependencies_helper.R      221      64  71.04%   40-41, 45, 50-53, 86-102, 108-116, 121-128, 134-135, 140-145, 152, 161-166, 220, 254, 266-282, 293, 403
R/dependencies.R             308      38  87.66%   78, 85, 102, 119, 194-208, 250, 258-261, 263, 275, 359, 421, 462-473, 520, 588-589, 596, 683
R/git_tools.R                160      73  54.37%   55, 71, 89-96, 99, 103, 120, 129-130, 146, 149-156, 169-180, 220-291
R/graph_methods.R             69       1  98.55%   114
R/host.R                      19      10  47.37%   6-9, 20-26
R/ref_strategy.R              40       0  100.00%
R/rstudio_addins.R             5       5  0.00%    6-22
R/rstudio_jobs.R              27      27  0.00%    3-70
R/utils.R                     92       6  93.48%   2, 8, 72-73, 82, 92
R/zzz.R                       18      10  44.44%   27-37
TOTAL                       1219     354  70.96%

Results for commit: 40c4ef830f6060408f8f3d486b936b1d46c52217

Minimum allowed coverage is 80%

:recycle: This comment has been updated with latest results

github-actions[bot] commented 2 years ago

Unit Tests Summary

    1 files    13 suites   14s :stopwatch:   68 tests   68 :heavy_check_mark: 0 :zzz: 0 :x: 205 runs  205 :heavy_check_mark: 0 :zzz: 0 :x:

Results for commit 74bcb1c7.

:recycle: This comment has been updated with latest results.

cicdguy commented 2 years ago

@nikolas-burkoff - do you mind if I upgrade dependencies in renv.lock?

nikolas-burkoff commented 2 years ago

@nikolas-burkoff - do you mind if I upgrade dependencies in renv.lock?

Nope that's fine with me (assuming tests pass of course!)

nikolas-burkoff commented 2 years ago

@nikolas-burkoff - do you mind if I upgrade dependencies in renv.lock?

I've done this here https://github.com/openpharma/staged.dependencies/pull/145

nikolas-burkoff commented 2 years ago

So in TL;DR form - how does this impact me? ;)

cicdguy commented 2 years ago

So in TL;DR form - how does this impact me? ;)

You can now run workflows on demand, any time manually. That's the big one.

Also, there's proper support for renv now across workflows, so this PR was sort of a test bed to make sure our common workflows are compatible with repos that have renv.lock files.

nikolas-burkoff commented 2 years ago

Cool thanks!