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openpharma / staged.dependencies

R package to implement development stages for package development
https://openpharma.github.io/staged.dependencies/
MIT License
12 stars 3 forks source link

Better messaging handling #187

Closed Melkiades closed 1 year ago

Melkiades commented 1 year ago

Fix #183

Now the printing is slimmer:

> x <- dependency_table(project = "../rtables/", verbose = 1)
Copying local dir /home/garolind/NEST/rtables to cache dir...
fetch https://github.com/insightsengineering/formatters.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/tern.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/tern.mmrm.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/tern.rbmi.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/teal.widgets.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/teal.modules.clinical.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/teal.modules.general.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/teal.modules.hermes.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/chevron.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/citril.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/teal.reporter.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/tern.gee.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/scda.test.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/rlistings.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/teal.osprey.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/nestcolor.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/biomarker-catalog.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/osprey.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/teal.goshawk.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/teal.modules.helios.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/tlg-catalog.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/teal.slice.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/teal.transform.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/teal.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/teal.logger.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/teal.code.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/teal.data.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/hermes.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/dunlin.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/citril.metadata.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/scda.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/scda.2022.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/goshawk.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/teal.devel.git in cache directory...
   - checkout branch origin/main in cache directory...
fetch https://github.com/insightsengineering/helios.git in cache directory...
   - checkout branch origin/main in cache directory...
Current cache directory: /home/user/.staged.dependencies/packages_cache

The same verbosity can be reached with verbose = 2

github-actions[bot] commented 1 year ago

Unit Tests Summary

    1 files    13 suites   12s :stopwatch:   71 tests   71 :heavy_check_mark: 0 :zzz: 0 :x: 215 runs  215 :heavy_check_mark: 0 :zzz: 0 :x:

Results for commit 993c6b99.

:recycle: This comment has been updated with latest results.

github-actions[bot] commented 1 year ago

badge

Code Coverage Summary

Filename                   Stmts    Miss  Cover    Missing
-----------------------  -------  ------  -------  -----------------------------------------------------------------------------------------------------------------------
R/caching.R                  173       6  96.53%   47, 75, 141-144
R/dependencies_app.R         134     134  0.00%    39-199
R/dependencies_helper.R      238      72  69.75%   42-43, 47, 52-55, 91-107, 113-122, 127-134, 140-143, 148-155, 161, 169-175, 231, 265, 276-294, 305, 414
R/dependencies.R             356      48  86.52%   87, 94, 110, 127, 211-227, 269, 277-280, 282, 295, 380, 384-385, 451, 455-456, 501-514, 555-556, 561, 632-633, 640, 730
R/git_tools.R                198      89  55.05%   75, 94-101, 104, 109, 142-145, 168-180, 195-219, 257-333
R/graph_methods.R             71       1  98.59%   115
R/host.R                      19      10  47.37%   5-8, 19-25
R/ref_strategy.R              44       0  100.00%
R/renv.R                      13       0  100.00%
R/rstudio_addins.R             5       5  0.00%    6-22
R/rstudio_jobs.R              27      27  0.00%    3-74
R/utils.R                    113       6  94.69%   3, 119, 128-129, 138, 148
R/zzz.R                       23      14  39.13%   30-44
TOTAL                       1414     412  70.86%

Results for commit: d17b20460b40ed452db4c87a51370dc4fbb05048

Minimum allowed coverage is 80%

:recycle: This comment has been updated with latest results