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openpharma / staged.dependencies

R package to implement development stages for package development
https://openpharma.github.io/staged.dependencies/
MIT License
12 stars 3 forks source link

You cannot access insightsengineering/teal.devel at host https://github.com #191

Closed m7pr closed 10 months ago

m7pr commented 10 months ago 
docker run ghcr.io/insightsengineering/rstudio:latest
git clone https://github.com/insightsengineering/teal.code
z <- staged.dependencies::dependency_table()

effect

Copying local dir /home/rstudio/test/teal.data to cache dir /home/rstudio/.staged.dependencies/packages_cache/local_insightsengineering_teal.data_39f26acbb991125a81ff5392c742cf86
clone https://github.com/insightsengineering/teal.code.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.code_f5c7ee90093dd244b11b1acde2d5098a
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.code_f5c7ee90093dd244b11b1acde2d5098a
clone https://github.com/insightsengineering/teal.logger.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.logger_db3be93ac2413ef16521b0cf8fe202ad
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.logger_db3be93ac2413ef16521b0cf8fe202ad
clone https://github.com/insightsengineering/teal.slice.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.slice_69fabf5d920c35ab0e950fac1a49b372
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.slice_69fabf5d920c35ab0e950fac1a49b372
clone https://github.com/insightsengineering/teal.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal_e38093f352c184cf676b1dd47551848c
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal_e38093f352c184cf676b1dd47551848c
clone https://github.com/insightsengineering/teal.modules.general.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.modules.general_6683cd12f2051b8649bc34a3a5b86bd1
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.modules.general_6683cd12f2051b8649bc34a3a5b86bd1
clone https://github.com/insightsengineering/teal.modules.clinical.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.modules.clinical_7480b81982f393c223354b432013836e
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.modules.clinical_7480b81982f393c223354b432013836e
clone https://github.com/insightsengineering/teal.transform.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.transform_7dbb21e492260b8f5bd20354278faa2c
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.transform_7dbb21e492260b8f5bd20354278faa2c
clone https://github.com/insightsengineering/teal.osprey.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.osprey_9d88421efa7fd7b6fcece04c431bbe47
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.osprey_9d88421efa7fd7b6fcece04c431bbe47
clone https://github.com/insightsengineering/teal.modules.hermes.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.modules.hermes_15b1e307810ca8699d3fc80b887a2add
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.modules.hermes_15b1e307810ca8699d3fc80b887a2add
clone https://github.com/insightsengineering/teal.modules.helios.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.modules.helios_737600447efe0473ee9d8c8ca851127e
clone https://github.com/insightsengineering/teal.goshawk.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.goshawk_23d2065f4fbd2bc73b043ff69b62027b
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.goshawk_23d2065f4fbd2bc73b043ff69b62027b
clone https://github.com/insightsengineering/teal.widgets.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.widgets_8f92a3d7b00ae5fadadf0ffc4492c7f2
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.widgets_8f92a3d7b00ae5fadadf0ffc4492c7f2
clone https://github.com/insightsengineering/teal.reporter.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.reporter_2c5a990a10b0c9b8f7bccf13bd04db2a
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.reporter_2c5a990a10b0c9b8f7bccf13bd04db2a
clone https://github.com/insightsengineering/nestcolor.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_nestcolor_2b763bd91b720d7414fc50e163378834
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_nestcolor_2b763bd91b720d7414fc50e163378834
clone https://github.com/insightsengineering/tern.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_tern_05d8cd0d757a67b0d1c893284424007a
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_tern_05d8cd0d757a67b0d1c893284424007a
clone https://github.com/insightsengineering/rtables.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_rtables_f0f6291eb2b1f6976bb05ff26dfa212d
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_rtables_f0f6291eb2b1f6976bb05ff26dfa212d
clone https://github.com/insightsengineering/tern.mmrm.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_tern.mmrm_ee1a7fba6deed5dd13ca0466e1c4e968
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_tern.mmrm_ee1a7fba6deed5dd13ca0466e1c4e968
clone https://github.com/insightsengineering/tern.gee.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_tern.gee_3aaa7fadfce37dee6734b561dcbf376c
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_tern.gee_3aaa7fadfce37dee6734b561dcbf376c
clone https://github.com/insightsengineering/rlistings.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_rlistings_7c08b1222c8163799de3c79a683ecc9c
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_rlistings_7c08b1222c8163799de3c79a683ecc9c
clone https://github.com/insightsengineering/formatters.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_formatters_2af660375fccd6c369329f665710ecae
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_formatters_2af660375fccd6c369329f665710ecae
clone https://github.com/insightsengineering/osprey.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_osprey_fd4956fcddf407f7776ca93a88340830
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_osprey_fd4956fcddf407f7776ca93a88340830
clone https://github.com/insightsengineering/hermes.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_hermes_c774027dbd79477ddd2093c770a88021
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_hermes_c774027dbd79477ddd2093c770a88021
clone https://github.com/insightsengineering/goshawk.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_goshawk_ca859ec43e2cee0eae1bf7222663c98c
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_goshawk_ca859ec43e2cee0eae1bf7222663c98c
clone https://github.com/insightsengineering/chevron.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_chevron_22a6dec8d97d5eb2c4cca8dbf1a885ed
clone https://github.com/insightsengineering/biomarker-catalog.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_biomarker-catalog_810ab5cb0ce7a100ecea7d78ad128f7d
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_biomarker-catalog_810ab5cb0ce7a100ecea7d78ad128f7d
clone https://github.com/insightsengineering/citril.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_citril_09d841be8f86395466af1f649ab829c1
clone https://github.com/insightsengineering/scda.test.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_scda.test_763fd6f0f55f5186da061770106c1612
clone https://github.com/insightsengineering/tern.rbmi.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_tern.rbmi_6a1fe99ca79df0966c0be53c96d0d6af
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_tern.rbmi_6a1fe99ca79df0966c0be53c96d0d6af
clone https://github.com/insightsengineering/tlg-catalog.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_tlg-catalog_6e297f1cdf8b224b494b4fe1f057d5d1
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_tlg-catalog_6e297f1cdf8b224b494b4fe1f057d5d1
clone https://github.com/openpharma/mmrm.git to directory /home/rstudio/.staged.dependencies/packages_cache/openpharma_mmrm_c14d28304e10a1542c52a0103838d41f
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/openpharma_mmrm_c14d28304e10a1542c52a0103838d41f
clone https://github.com/insightsengineering/scda.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_scda_6ea836b807b2d80ac7feb032e00c8aa2
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_scda_6ea836b807b2d80ac7feb032e00c8aa2
clone https://github.com/insightsengineering/scda.2022.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_scda.2022_fae81d8a1331fd1546c933c074ca8409
   - checkout branch origin/main in directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_scda.2022_fae81d8a1331fd1546c933c074ca8409
clone https://github.com/insightsengineering/teal.devel.git to directory /home/rstudio/.staged.dependencies/packages_cache/insightsengineering_teal.devel_df57b5f07d223d3cfb704fc28e033b08
Warning messages:
1: In value[[3L]](cond) :
  You cannot access insightsengineering/teal.modules.helios at host https://github.com. If you expect to be able to access this repo then check that repo and token in envvar 'GITHUB_PAT' are correct.
The response's content was:
Bad credentials
https://docs.github.com/rest Staged dependencies will continue, ignoring this repository. Some packages may not be able to be installed and its package name is assumed to match repository name.
2: In value[[3L]](cond) :
  You cannot access insightsengineering/chevron at host https://github.com. If you expect to be able to access this repo then check that repo and token in envvar 'GITHUB_PAT' are correct.
The response's content was:
Bad credentials
https://docs.github.com/rest Staged dependencies will continue, ignoring this repository. Some packages may not be able to be installed and its package name is assumed to match repository name.
3: In value[[3L]](cond) :
  You cannot access insightsengineering/citril at host https://github.com. If you expect to be able to access this repo then check that repo and token in envvar 'GITHUB_PAT' are correct.
The response's content was:
Bad credentials
https://docs.github.com/rest Staged dependencies will continue, ignoring this repository. Some packages may not be able to be installed and its package name is assumed to match repository name.
4: In value[[3L]](cond) :
  You cannot access insightsengineering/scda.test at host https://github.com. If you expect to be able to access this repo then check that repo and token in envvar 'GITHUB_PAT' are correct.
The response's content was:
Bad credentials
https://docs.github.com/rest Staged dependencies will continue, ignoring this repository. Some packages may not be able to be installed and its package name is assumed to match repository name.
5: In value[[3L]](cond) :
  You cannot access insightsengineering/teal.devel at host https://github.com. If you expect to be able to access this repo then check that repo and token in envvar 'GITHUB_PAT' are correct.
The response's content was:
Bad credentials
https://docs.github.com/rest Staged dependencies will continue, ignoring this repository. Some packages may not be able to be installed and its package name is assumed to match repository name.
m7pr commented 10 months ago

I'm concerned about teal.devel Retrying with GITHUB_PAT set to my own

m7pr commented 10 months ago

worked after setting up Sys.setenv(GITHUB_PAT =