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openpipelines-bio / openpipeline

https://openpipelines.bio
MIT License
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Port single sample pipeline #1

Closed ddemaeyer closed 1 year ago

ddemaeyer commented 2 years ago

Add code for being able to run

singleSample_ = id_input_params_ \
    | h5adfeaturesplit \
    | qcmetrics \
    | lognorm \
    | hvc_scanpy \
    | pca \
    | nn \
    | leiden \
    | umap \
    | map { overrideOptionValue(it, "publish", "output", "${it[0]}/${it[0]}.h5ad") } \
    | publish
rcannood commented 2 years ago

darn, is it not possible to have multiple assignees?

rcannood commented 2 years ago

Discussed during last meeting.

The pipeline is currently organised as:

diagram_orig

It needs to be changed to:

diagram_new

rcannood commented 1 year ago

This pipeline is included in 0.5.0