Pipeline examples

[ddemaeyer]

Create diagrams to sketch and define minimal requirements:

1. Uni-batch
2. Multi-modal single batch
3. Single modal multi-batch
4. Multi-modal multi-batch
   • Full joint embedding
   • Per modality embedding

Align on this.

[LuckyMD]

4 use cases:

• single-mode multi-batch => Dries
• multimodal multi-batch
  • full joint embedding => Malte
  • per modality analysis => Faby
• transcriptomics uni-batch w/ RNA velocity => Robrecht

Goals:

• inputs for the analysis pipeline
• steps in the analysis pipeline
• possible outputs from the pipeline

[rcannood]

Put your outputs into docs/use-cases! :)

[rcannood]

Examples have been moved to the documentation site, currently at https://openpipelines-bio.github.io/architecture/use-cases.html (subject to change).