openpipelines-bio / openpipeline

https://openpipelines.bio
MIT License
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Feature/bbknn workflow #456

Closed mauro-saporita closed 9 months ago

mauro-saporita commented 11 months ago

Changelog

Add BBKNN integration pipeline: run bbknn followed by leiden and run umap on the result.

Checklist before requesting a review

DriesSchaumont commented 10 months ago

Hi @mauro-saporita Is this PR ready for review?

mauro-saporita commented 10 months ago

@ddemaeyer sorry, there was a bit of mess in the branch. I've cleaned up everything and now it should be ready for review and merge.

ddemaeyer commented 10 months ago

@DriesSchaumont LGTM

DriesSchaumont commented 9 months ago

Great, LGTM! Thanks @mauro-saporita