openpipelines-bio / openpipeline

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Feature/cellxgene census update #520

Closed MatthiasBeyens closed 8 months ago

MatthiasBeyens commented 8 months ago

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MatthiasBeyens commented 8 months ago

@DriesSchaumont once CI tests ran successfully, could you include current PR along the scheduled 0.10.0 release? Much appreciated! ;-)

rcannood commented 8 months ago

Hey Matthias! Thanks for the update!

The biggest changes in this PR is that the different arguments have been replaced with simply a query that one needs to provide, correct?

This assumes that the user knows exactly how to build such a query and what the format of cell census is.

Is this not an issue? Might it be a good idea to have a few arguments which will add extra terms to the query?