Updated read_percentage function for cellranger multi metrics processing #704

[LucHendriks]

Changelog

I updated the read_percentage() function in

Issue ticket number and link

Closes #704

Checklist before requesting a review

• [x] I have performed a self-review of my code

• [x] Conforms to the Contributor's guide

• Check the correct box. Does this PR contain:

  • [ ] Breaking changes
  • [ ] New functionality
  • [ ] Major changes
  • [ ] Minor changes
  • [ ] Documentation
  • [x] Bug fixes

• [x] Proposed changes are described in the CHANGELOG.md

• [x] CI tests succeed!

  
  ====================================================================
  +/tmp/viash_test_from_cellranger_multi_to_h5mu8973967691889098180/test_test/test_executable
  ============================= test session starts ==============================
  platform linux -- Python 3.10.13, pytest-8.0.0, pluggy-1.4.0
  rootdir: /viash_automount/tmp/viash_test_from_cellranger_multi_to_h5mu8973967691889098180/test_test
  plugins: viashpy-0.6.0
  collected 2 items

tmp/viash-run-from_cellranger_multi_to_h5mu-ZnXVcJ.py .. [100%]

=============================== warnings summary =============================== tmp/viash-run-from_cellranger_multi_to_h5mu-ZnXVcJ.py::test_cellranger_multi_basic tmp/viash-run-from_cellranger_multi_to_h5mu-ZnXVcJ.py::test_cellranger_multi_basic tmp/viash-run-from_cellranger_multi_to_h5mu-ZnXVcJ.py::test_cellranger_multi_basic tmp/viash-run-from_cellranger_multi_to_h5mu-ZnXVcJ.py::test_cellranger_multi_to_h5mu_crispr tmp/viash-run-from_cellranger_multi_to_h5mu-ZnXVcJ.py::test_cellranger_multi_to_h5mu_crispr /usr/local/lib/python3.10/site-packages/anndata/_core/anndata.py:453: PendingDeprecationWarning: The dtype argument will be deprecated in anndata 0.10.0 warnings.warn(

tmp/viash-run-from_cellranger_multi_to_h5mu-ZnXVcJ.py::test_cellranger_multi_basic /usr/local/lib/python3.10/site-packages/anndata/_core/anndata.py:121: ImplicitModificationWarning: Transforming to str index. warnings.warn("Transforming to str index.", ImplicitModificationWarning)

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ======================== 2 passed, 6 warnings in 7.08s =========================

SUCCESS! All 1 out of 1 test scripts succeeded! Cleaning up temporary directory