openpipelines-bio / openpipeline

https://openpipelines.bio
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Add scaling component as an optional component to the pipeline #715

Open ddemaeyer opened 2 months ago

ddemaeyer commented 2 months ago

Add scaling to the RNA layer (i.e. the transform/scaling) component to the multisample pipeline. To run the pipeline with scaling an optional parameter can be set that will add the scaled layer that will be used to perform a parallel scaled analysis of the data.

Input

scaling: true

Output:

h5mu["rna"].layers["scaled"]
h5mu["rna"].obsm["X_pca_scaled"]
h5mu["rna"].obsm["X_umap"]
...