Add script for downloading atac tiny bcl test file
Add reference/build_cellranger_arc_reference component. It creates reference compatible with both Multiome (ATAC + RNA) and ATAC-only pipelines. For more information, check out cellranger documentation
Add demux/cellranger_atac_mkfastq component for generation of fastq-files from bcl-files
Fix a bug with missing import in src/demux/cellranger_mkfastq/test.py
Changelog
reference/build_cellranger_arc_reference
component. It creates reference compatible with both Multiome (ATAC + RNA) and ATAC-only pipelines. For more information, check out cellranger documentationdemux/cellranger_atac_mkfastq
component for generation of fastq-files from bcl-filessrc/demux/cellranger_mkfastq/test.py
Issue ticket number and link
Contributes to https://github.com/openpipelines-bio/openpipeline/issues/398
Checklist before requesting a review
[x] I have performed a self-review of my code
[x] Conforms to the Contributor's guide
Check the correct box. Does this PR contain:
[ ] Proposed changes are described in the CHANGELOG.md
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