Update tests for components under multiomics/process_samples - Githubissues

openpipelines-bio / openpipeline

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Update tests for components under multiomics/process_samples #734

Closed jakubmajercik closed 1 month ago

jakubmajercik commented 1 month ago

Updating test suites with:

prebuilt asserters
synthetic data
pytest fixtures instead of hardcoded arguments

Components to be checked/modified:

[x] metadata/add_id
[ ] NA - workflows/multiomics/split_modalities
[x] dataflow/merge
[ ] dataflow/concatenate_h5mu - for later?
[x] transfer/publish
[ ] NA workflows/rna/rna_singlesample
[ ] NA workflows/prot/prot_singlesample
[ ] NA workflows/gdo/gdo_singlesample
[ ] NA workflows/multiomics/process_batches