openpipelines-bio / openpipeline

https://openpipelines.bio
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scGPT embedding component #761

Closed dorien-er closed 4 days ago

dorien-er commented 1 month ago

Changelog

scGPT embedding for integration (zero shot or fine-tuning) component

Checklist before requesting a review

rcannood commented 1 month ago

:kissing: :notes: Nothing to see here

dorien-er commented 4 days ago

Ended up removing the dropout parameter in the end. Turns out we don't need it to generate embeddings, only relevant when we start fine-tuning models :-) Thx for the reviews!