Open bitsgalore opened 2 years ago
First step could be to simplify handling of glob patterns, following:
https://github.com/KBNLresearch/isolyzer/commit/fa48ba677897e10dafd41d9533ec2fbf3d1334e6
(In this case the OS takes care of the glob expansion on Linux-based platforms)
Stand-alone test script here:
https://gist.github.com/bitsgalore/668eed7ae4421468f83c8ab7e38556f1
The code in the findFiles function is very complex and difficult to read. It might be possible to simplify things using e.g. the Pathlib module, which also supports glob patterns. See also here.
Pathlib is only available for Python 3.4 and more recent, so this refactor should wait until we decide to drop Python 2.7 support.
Also, any changes in this part of the code will need thorough cross-platform testing, as I remember getting this to work in the first place was quite a challenge, see discussion here and here.