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openproblems-bio
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openproblems-v2
Formalizing and benchmarking open problems in single-cell genomics
MIT License
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clean up readme
#467
rcannood
closed
3 weeks ago
0
revert changes to the mnnpy component since it requires python:3.8
#466
rcannood
closed
3 weeks ago
0
remove migrated tasks
#465
rcannood
closed
3 weeks ago
1
update images
#464
rcannood
closed
3 weeks ago
0
Return more struct info
#463
rcannood
closed
1 month ago
1
Add spatially variable genes task
#462
sainirmayi
closed
3 weeks ago
0
Bump viash-io/viash-actions from 5 to 6
#461
dependabot[bot]
opened
3 months ago
0
Batch integration: partial reading
#460
mumichae
closed
1 month ago
0
Feature/no ref/update common resources
#459
KaiWaldrant
closed
1 month ago
2
add csv and parquet support to the readme generator
#458
rcannood
closed
3 months ago
0
heuristic for matching workflow methods
#456
rcannood
opened
4 months ago
0
prepare task result processors for viash 0.9
#455
rcannood
closed
4 months ago
0
[BI] Add control methods
#454
mumichae
closed
3 months ago
0
add more info to the json outputs
#453
rcannood
closed
4 months ago
0
Adding Seurat's RPCA method to Benchmarking tasks?
#452
andrewdchen
opened
4 months ago
3
Add nnls to dependencies
#451
sainirmayi
closed
4 months ago
0
Minor updates to spatial decomposition methods
#450
sainirmayi
closed
4 months ago
0
Feature/no ref/foundation model
#449
KaiWaldrant
opened
5 months ago
0
just use labels_tw
#448
rcannood
closed
5 months ago
0
Update Neurips2021 dataset loader
#447
KaiWaldrant
closed
5 months ago
0
Improve `trace.txt` linking to results
#446
rcannood
opened
5 months ago
0
Multimodal fixes
#445
rcannood
closed
5 months ago
0
More PM fixes
#444
rcannood
closed
5 months ago
0
More PM fixes
#443
rcannood
closed
5 months ago
0
Various PM fixes
#442
rcannood
closed
5 months ago
0
Simple MLP attempt #2
#441
rcannood
closed
1 month ago
0
Add gpu processing
#440
KaiWaldrant
closed
5 months ago
0
Update PM api
#439
rcannood
closed
5 months ago
0
Neurips22 dataset
#438
KaiWaldrant
closed
5 months ago
0
Minor changes in PM task
#437
rcannood
closed
5 months ago
0
update cxg census
#436
rcannood
closed
5 months ago
0
Minor updates to fix failing processes in spatial decomposition benchmark
#435
sainirmayi
closed
5 months ago
0
Bump base images to 1.0.4
#434
rcannood
closed
5 months ago
0
CI test fails `Error: Expected a python object, received a character`
#433
KaiWaldrant
closed
5 months ago
1
[PM] Refactor guanlab method
#432
KaiWaldrant
closed
5 months ago
1
FIx dataset simulator
#431
sainirmayi
closed
5 months ago
0
Update OpenProblemsv1 multimodal datasetloader
#430
KaiWaldrant
closed
5 months ago
0
Update spatial decomposition resource scripts
#429
sainirmayi
closed
5 months ago
0
Use CLR and TFIDF for ADT and ATAC normalisation
#428
rcannood
closed
5 months ago
1
Finetune task readme
#427
rcannood
closed
5 months ago
0
Bump peaceiris/actions-gh-pages from 3 to 4
#426
dependabot[bot]
closed
5 months ago
0
[DR] Port UMAP PCA from v1
#425
rcannood
opened
5 months ago
0
Update nextflow error strategy
#424
KaiWaldrant
closed
5 months ago
0
[bat_int] refactor methods
#423
KaiWaldrant
closed
6 months ago
0
update to scib 1.1.5
#422
rcannood
closed
6 months ago
0
update readmes
#421
rcannood
closed
6 months ago
0
simplify batch int output format
#420
rcannood
closed
6 months ago
1
fix hvg-related var slots
#419
rcannood
closed
6 months ago
0
[bat_int] Remove scib package from scvi methods
#418
KaiWaldrant
closed
6 months ago
1
lower bound on scvi-tools 1.1.0
#417
martinkim0
closed
6 months ago
1
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