Here is a list of fields that new data loaders added during the jamboree should provide to make future integration with cellxgene easier:
author: Union[str, list] = '' # author (list) who sampled / created the data set
doi: str = '' # doi of data set accompanying manuscript
sample_fns: Union[str, Dict[str, list]] = '' # file name of the first *.h5ad file
download_url_data: str = '' # download website(s) of data files
download_url_meta: str = '' (optional) # download website(s) of meta data files
organ: str = '' # (*) organ (anatomical structure)
organism: str = '' # (*) species / organism
assay: str = '' # (*, optional) protocol used to sample data (e.g. smart-seq2)
normalization: str = '' # raw or the used normalization technique
year: str = 2021 # year in which sample was acquired
number_of_datasets: str = 1 # Required to determine the file names
cell_type: str = "" # Will be auto-converted to Cell ontology labels, required for future loading into cellxgene.
Here is a list of fields that new data loaders added during the jamboree should provide to make future integration with cellxgene easier: