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openproblems-bio / openproblems

Formalizing and benchmarking open problems in single-cell genomics
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[differential abundance][method] differential testing on Louvain clusters #274

Closed emdann closed 1 month ago

emdann commented 3 years ago

What is the method? Testing with Poisson GLM for differences between conditions in discrete clusters, as Haber et al. 2017

Where is the code located? Example R implementation https://github.com/MarioniLab/milo_analysis_2020/blob/fdf6a2c51e98c4a50e289f42e694f0f1f51cb153/benchmark/benchmark_utils.R#L352-L404

github-actions[bot] commented 1 month ago

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