openproblems-bio / openproblems

Formalizing and benchmarking open problems in single-cell genomics
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Wish list for datasets #307

Closed LuckyMD closed 1 month ago

LuckyMD commented 3 years ago

This is a wish list for new datasets that would be very helpful in benchmarking methods in a particular task. If you have anything to add, please comment here with the dataset description, and the task name.

wes-lewis commented 3 years ago

RNA Velocity datasets from scVelo would be helpful for testing denoising accuracy and visualizing impact of denoising methods on the velocity graph and velocity vectors visualized on top of a low dimensional embedding.

LuckyMD commented 3 years ago

@wes-lewis Those can be obtained quite easily... I believe scvelo even has example datasets in their tutorial. Or are you looking for something specific?

github-actions[bot] commented 1 month ago

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