openproblems-bio / openproblems

Formalizing and benchmarking open problems in single-cell genomics
MIT License
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Need to update the README task leaders #497

Closed LuckyMD closed 1 year ago

LuckyMD commented 2 years ago

Currently the README says:

Task authors (alphabetically):

Emma Dann (@emdann) - Differential abundance
Wes Lewis (@weslewis) - Differential abundance and data denoising
Mohammad Lotfallahi (@M0hammadL) - Label projection task
Qian Qin (@qinqian) - Predicting gene expression from chromatin accessibility
Daniel Strobl (@danielStrobl) - Batch integration
Michael Vinyard (@mvinyard) - Stress preservation in dimensionality reduction
Florian Wagner (@flo-compbio) - Data denoising

This should probably read the following to more accurately reflect those who took leadership for different tasks:

Task leaders:

Differential abundance - Emma Dann (@emdann) and Wes Lewis (@weslewis)
Data denoising - Wes Lewis (@weslewis)  
Label projection - Nik Markov (@mxposed)
Regulatory effect prediction - Qian Qin (@qinqian)
ATAC denoising - Qian Qin (@qinqian) # or also konstantin? (i believe that's his name)
Batch integration - Daniel Strobl (@danielStrobl) 
Dimensionality reduction - Luke Zappia (@lazappi) and Michael Vinyard (@mvinyard)
Spatial deconvolution - Giovanni Palla (@giovp) and Alma Anderson (@almaan)
Multimodal data integration - @scottgigante-immunai? @rcannood? All of the core team?

Also, CZI support should include Ivana.

LuckyMD commented 2 years ago

Maybe this could be confirmed by task leaders? @lazappi @mvinyard @mxposed @emdann @wes-lewis @qinqian @danielStrobl @giovp and @almaan?

Did I forget anyone?

giovp commented 2 years ago

I confirm!

mvinyard commented 2 years ago

Confirm - thanks, @LuckyMD. Although I must say @lazappi did considerably more work than I did on this task, so I don't want to over-credit myself

mxposed commented 2 years ago

I confirm, please spell me Nick

wes-lewis commented 2 years ago

I confirm!

danielStrobl commented 2 years ago

I confirm!

qinqian commented 2 years ago

I confirm Regulatory effect prediction, in which the subtask ATAC denoising should be konstantin.

lazappi commented 2 years ago

Confirm

emdann commented 2 years ago

confirm