openproblems-bio / openproblems

Formalizing and benchmarking open problems in single-cell genomics
MIT License
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add ncells to seuratv3 test mode #699

Closed scottgigante-immunai closed 1 year ago

scottgigante-immunai commented 1 year ago

Too slow, need to find ways to speed it up

codecov[bot] commented 1 year ago

Codecov Report

Base: 95.03% // Head: 95.05% // Increases project coverage by +0.01% :tada:

Coverage data is based on head (17fb637) compared to base (6b50d48). Patch coverage: 100.00% of modified lines in pull request are covered.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #699 +/- ## ========================================== + Coverage 95.03% 95.05% +0.01% ========================================== Files 152 153 +1 Lines 4052 4062 +10 Branches 206 206 ========================================== + Hits 3851 3861 +10 Misses 131 131 Partials 70 70 ``` | Flag | Coverage Δ | | |---|---|---| | unittests | `94.95% <100.00%> (+0.01%)` | :arrow_up: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#carryforward-flags-in-the-pull-request-comment) to find out more. | [Impacted Files](https://codecov.io/gh/openproblems-bio/openproblems/pull/699?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio) | Coverage Δ | | |---|---|---| | [...ms/tasks/spatial\_decomposition/methods/seuratv3.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/699/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL3NwYXRpYWxfZGVjb21wb3NpdGlvbi9tZXRob2RzL3NldXJhdHYzLnB5) | `100.00% <100.00%> (ø)` | | | [...lems/tasks/\_cell\_cell\_communication/\_common/api.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/699/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19jZWxsX2NlbGxfY29tbXVuaWNhdGlvbi9fY29tbW9uL2FwaS5weQ==) | `89.52% <0.00%> (-0.10%)` | :arrow_down: | | [...l\_cell\_communication/\_common/metrics/odds\_ratio.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/699/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19jZWxsX2NlbGxfY29tbXVuaWNhdGlvbi9fY29tbW9uL21ldHJpY3Mvb2Rkc19yYXRpby5weQ==) | `100.00% <0.00%> (ø)` | | | [...ems/tasks/denoising/datasets/tabula\_muris\_senis.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/699/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL2Rlbm9pc2luZy9kYXRhc2V0cy90YWJ1bGFfbXVyaXNfc2VuaXMucHk=) | `100.00% <0.00%> (ø)` | | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio)

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