openproblems-bio / openproblems

Formalizing and benchmarking open problems in single-cell genomics
MIT License
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Update scvi-tools requirement from ~=0.16 to ~=0.19 in /docker/openproblems-r-pytorch #731

Closed dependabot[bot] closed 1 year ago

dependabot[bot] commented 1 year ago

Updates the requirements on scvi-tools to permit the latest version.

Release notes

Sourced from scvi-tools's releases.

scvi-tools 0.19.0

See the release notes for all changes.

This release is available via PyPi:

pip install scvi-tools

Conda availability will follow (< 2 days typically)

Please report any issues on GitHub.

Commits


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github-actions[bot] commented 1 year ago

Current build status

codecov[bot] commented 1 year ago

Codecov Report

Base: 94.95% // Head: 94.95% // No change to project coverage :thumbsup:

Coverage data is based on head (3fd25e3) compared to base (61be1cf). Patch has no changes to coverable lines.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #731 +/- ## ======================================= Coverage 94.95% 94.95% ======================================= Files 157 157 Lines 4298 4298 Branches 228 228 ======================================= Hits 4081 4081 Misses 142 142 Partials 75 75 ``` | Flag | Coverage Δ | | |---|---|---| | unittests | `94.95% <ø> (ø)` | | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#carryforward-flags-in-the-pull-request-comment) to find out more. | [Impacted Files](https://codecov.io/gh/openproblems-bio/openproblems/pull/731?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio) | Coverage Δ | | |---|---|---| | [...l\_cell\_communication/\_common/metrics/odds\_ratio.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/731?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19jZWxsX2NlbGxfY29tbXVuaWNhdGlvbi9fY29tbW9uL21ldHJpY3Mvb2Rkc19yYXRpby5weQ==) | `92.59% <0.00%> (ø)` | | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio)

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scottgigante-immunai commented 1 year ago

Tests at https://tower.nf/orgs/openproblems-bio/workspaces/openproblems-bio/watch/39ZufjqifmQhcD