openproblems-bio / openproblems

Formalizing and benchmarking open problems in single-cell genomics
MIT License
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Label projection describe datasets #776

Closed mxposed closed 1 year ago

mxposed commented 1 year ago

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Testing

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scottgigante-immunai commented 1 year ago

@mxposed can you please fix the flake8 errors here?

codecov[bot] commented 1 year ago

Codecov Report

Base: 94.78% // Head: 94.91% // Increases project coverage by +0.12% :tada:

Coverage data is based on head (dcf198e) compared to base (3d8964a). Patch coverage: 99.32% of modified lines in pull request are covered.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #776 +/- ## ========================================== + Coverage 94.78% 94.91% +0.12% ========================================== Files 155 157 +2 Lines 4163 4269 +106 Branches 215 226 +11 ========================================== + Hits 3946 4052 +106 Misses 142 142 Partials 75 75 ``` | Flag | Coverage Δ | | |---|---|---| | unittests | `94.91% <99.32%> (+0.12%)` | :arrow_up: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#carryforward-flags-in-the-pull-request-comment) to find out more. | [Impacted Files](https://codecov.io/gh/openproblems-bio/openproblems/pull/776?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio) | Coverage Δ | | |---|---|---| | [...oblems/data/Wagner\_2018\_zebrafish\_embryo\_CRISPR.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/776?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL2RhdGEvV2FnbmVyXzIwMThfemVicmFmaXNoX2VtYnJ5b19DUklTUFIucHk=) | `0.00% <ø> (ø)` | | | [openproblems/data/multimodal/citeseq.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/776?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL2RhdGEvbXVsdGltb2RhbC9jaXRlc2VxLnB5) | `100.00% <ø> (ø)` | | | [openproblems/data/tabula\_muris\_senis.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/776?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL2RhdGEvdGFidWxhX211cmlzX3NlbmlzLnB5) | `83.11% <ø> (ø)` | | | [...ration/batch\_integration\_embed/metrics/cc\_score.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/776?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9lbWJlZC9tZXRyaWNzL2NjX3Njb3JlLnB5) | `100.00% <ø> (ø)` | | | [...n/batch\_integration\_embed/metrics/iso\_label\_sil.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/776?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9lbWJlZC9tZXRyaWNzL2lzb19sYWJlbF9zaWwucHk=) | `100.00% <ø> (ø)` | | | [...ntegration/batch\_integration\_embed/metrics/kBET.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/776?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9lbWJlZC9tZXRyaWNzL2tCRVQucHk=) | `100.00% <ø> (ø)` | | | [...integration/batch\_integration\_embed/metrics/pcr.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/776?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9lbWJlZC9tZXRyaWNzL3Bjci5weQ==) | `100.00% <ø> (ø)` | | | [...ation/batch\_integration\_embed/metrics/sil\_batch.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/776?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9lbWJlZC9tZXRyaWNzL3NpbF9iYXRjaC5weQ==) | `100.00% <ø> (ø)` | | | [...tion/batch\_integration\_embed/metrics/silhouette.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/776?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9lbWJlZC9tZXRyaWNzL3NpbGhvdWV0dGUucHk=) | `100.00% <ø> (ø)` | | | [...tion/batch\_integration\_feature/methods/baseline.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/776?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9mZWF0dXJlL21ldGhvZHMvYmFzZWxpbmUucHk=) | `100.00% <ø> (ø)` | | | ... and [97 more](https://codecov.io/gh/openproblems-bio/openproblems/pull/776?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio) | | Help us with your feedback. 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