openproblems-bio / openproblems

Formalizing and benchmarking open problems in single-cell genomics
MIT License
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Test all metadata #813

Closed scottgigante-immunai closed 1 year ago

github-actions[bot] commented 1 year ago

Current build status

codecov[bot] commented 1 year ago

Codecov Report

Base: 95.11% // Head: 91.52% // Decreases project coverage by -3.59% :warning:

Coverage data is based on head (9331310) compared to base (5be696e). Patch coverage: 100.00% of modified lines in pull request are covered.

:exclamation: Current head 9331310 differs from pull request most recent head 3f72c7b. Consider uploading reports for the commit 3f72c7b to get more accurate results

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #813 +/- ## ========================================== - Coverage 95.11% 91.52% -3.59% ========================================== Files 173 192 +19 Lines 4482 5370 +888 Branches 230 321 +91 ========================================== + Hits 4263 4915 +652 - Misses 142 356 +214 - Partials 77 99 +22 ``` | Flag | Coverage Δ | | |---|---|---| | unittests | `91.52% <100.00%> (-3.59%)` | :arrow_down: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#carryforward-flags-in-the-pull-request-comment) to find out more. | [Impacted Files](https://codecov.io/gh/openproblems-bio/openproblems/pull/813?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio) | Coverage Δ | | |---|---|---| | [openproblems/tasks/denoising/methods/dca.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/813?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL2Rlbm9pc2luZy9tZXRob2RzL2RjYS5weQ==) | `100.00% <ø> (ø)` | | | [openproblems/tasks/denoising/methods/magic.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/813?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL2Rlbm9pc2luZy9tZXRob2RzL21hZ2ljLnB5) | `100.00% <ø> (ø)` | | | [...integration/batch\_integration\_embed/metrics/ari.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/813?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9lbWJlZC9tZXRyaWNzL2FyaS5weQ==) | `100.00% <100.00%> (ø)` | | | [...ch\_integration\_embed/metrics/graph\_connectivity.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/813?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9lbWJlZC9tZXRyaWNzL2dyYXBoX2Nvbm5lY3Rpdml0eS5weQ==) | `100.00% <100.00%> (ø)` | | | [...on/batch\_integration\_embed/metrics/iso\_label\_f1.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/813?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9lbWJlZC9tZXRyaWNzL2lzb19sYWJlbF9mMS5weQ==) | `100.00% <100.00%> (ø)` | | | [...integration/batch\_integration\_embed/metrics/nmi.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/813?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9lbWJlZC9tZXRyaWNzL25taS5weQ==) | `100.00% <100.00%> (ø)` | | | [...tegration/batch\_integration\_feature/metrics/ari.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/813?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9mZWF0dXJlL21ldHJpY3MvYXJpLnB5) | `100.00% <100.00%> (ø)` | | | [...tion/batch\_integration\_feature/metrics/cc\_score.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/813?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9mZWF0dXJlL21ldHJpY3MvY2Nfc2NvcmUucHk=) | `100.00% <100.00%> (ø)` | | | [...\_integration\_feature/metrics/graph\_connectivity.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/813?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9mZWF0dXJlL21ldHJpY3MvZ3JhcGhfY29ubmVjdGl2aXR5LnB5) | `100.00% <100.00%> (ø)` | | | [.../batch\_integration\_feature/metrics/iso\_label\_f1.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/813?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9mZWF0dXJlL21ldHJpY3MvaXNvX2xhYmVsX2YxLnB5) | `100.00% <100.00%> (ø)` | | | ... and [29 more](https://codecov.io/gh/openproblems-bio/openproblems/pull/813?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio) | | Help us with your feedback. 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