Update scvi-tools requirement from ~=0.19 to ~=0.20 in /docker/openproblems-r-pytorch

[dependabot[bot]]

Updates the requirements on scvi-tools to permit the latest version.

Release notes

Sourced from scvi-tools's releases.

scvi-tools 0.20.0

See the release notes for all changes.

This release is available via PyPi:

pip install scvi-tools

Conda availability will follow (< 2 days typically)

Please report any issues on GitHub.

Commits

• 486e3e4 Release 0.20.0 (#1888)
• 3792568 update tutorials, bump beta, fix tutorials index (#1886)
• 6cb0709 Use cellxgene download in HubModel when needed (#1884)
• 744ba4c Update README.md (#1885)
• e361b64 Implement dev container for Codespaces (#1836)
• 2681234 Scbasset fixes 2 (#1882)
• 0b820b2 Add autotune, scBasset batch tutorials (#1879)
• a9e85e8 cellxgene download function (#1880)
• 495e5bc Fix basset architecture (#1874)
• bf75e99 Rename: latent -> minified (#1876)
• Additional commits viewable in compare view

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[codecov[bot]]

Codecov Report

Patch coverage: 98.55% and project coverage change: -0.07 :warning:

Comparison is base (9d16650) 95.60% compared to head (f7e21aa) 95.53%.

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #814 +/- ## ========================================== - Coverage 95.60% 95.53% -0.07% ========================================== Files 187 187 Lines 4980 5063 +83 Branches 273 279 +6 ========================================== + Hits 4761 4837 +76 - Misses 141 147 +6 - Partials 78 79 +1 ``` | Flag | Coverage Δ | | |---|---|---| | unittests | `95.53% <98.55%> (-0.07%)` | :arrow_down: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#carryforward-flags-in-the-pull-request-comment) to find out more. | [Impacted Files](https://codecov.io/gh/openproblems-bio/openproblems/pull/814?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio) | Coverage Δ | | |---|---|---| | [...ration/batch\_integration\_embed/metrics/cc\_score.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/814?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9lbWJlZC9tZXRyaWNzL2NjX3Njb3JlLnB5) | `100.00% <ø> (ø)` | | | [...n/batch\_integration\_embed/metrics/iso\_label\_sil.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/814?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9lbWJlZC9tZXRyaWNzL2lzb19sYWJlbF9zaWwucHk=) | `100.00% <ø> (ø)` | | | [...ntegration/batch\_integration\_embed/metrics/kBET.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/814?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9lbWJlZC9tZXRyaWNzL2tCRVQucHk=) | `100.00% <ø> (ø)` | | | [...integration/batch\_integration\_embed/metrics/pcr.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/814?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9lbWJlZC9tZXRyaWNzL3Bjci5weQ==) | `100.00% <ø> (ø)` | | | [...ation/batch\_integration\_embed/metrics/sil\_batch.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/814?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9lbWJlZC9tZXRyaWNzL3NpbF9iYXRjaC5weQ==) | `100.00% <ø> (ø)` | | | [...tion/batch\_integration\_embed/metrics/silhouette.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/814?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9lbWJlZC9tZXRyaWNzL3NpbGhvdWV0dGUucHk=) | `100.00% <ø> (ø)` | | | [...ch\_integration\_feature/metrics/hvg\_conservation.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/814?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9mZWF0dXJlL21ldHJpY3MvaHZnX2NvbnNlcnZhdGlvbi5weQ==) | `100.00% <ø> (ø)` | | | [...tegration/batch\_integration\_graph/methods/bbknn.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/814?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9ncmFwaC9tZXRob2RzL2Jia25uLnB5) | `100.00% <ø> (ø)` | | | [...egration/batch\_integration\_graph/methods/combat.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/814?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9ncmFwaC9tZXRob2RzL2NvbWJhdC5weQ==) | `100.00% <ø> (ø)` | | | [...gration/batch\_integration\_graph/methods/fastmnn.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/814?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9ncmFwaC9tZXRob2RzL2Zhc3Rtbm4ucHk=) | `100.00% <ø> (ø)` | | | ... and [82 more](https://codecov.io/gh/openproblems-bio/openproblems/pull/814?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio) | | Help us with your feedback. 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[dependabot[bot]]

Dependabot tried to update this pull request, but something went wrong. We're looking into it, but in the meantime you can retry the update by commenting @dependabot rebase.

[dependabot[bot]]

Dependabot tried to update this pull request, but something went wrong. We're looking into it, but in the meantime you can retry the update by commenting @dependabot rebase.

[dependabot[bot]]

A newer version of scvi-tools exists, but since this PR has been edited by someone other than Dependabot I haven't updated it. You'll get a PR for the updated version as normal once this PR is merged.

[scottgigante-immunai]

Passed at https://tower.nf/orgs/openproblems-bio/workspaces/openproblems-bio/watch/jEapwwdyxIn3M