openproblems-bio / openproblems

Formalizing and benchmarking open problems in single-cell genomics
MIT License
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Update sagemaker requirement from ==2.116.* to ==2.141.* in /docker/openproblems #860

Closed dependabot[bot] closed 1 year ago

dependabot[bot] commented 1 year ago

Updates the requirements on sagemaker to permit the latest version.

Release notes

Sourced from sagemaker's releases.

v2.141.0

Features

  • AutoGluon 0.7.0 image_uris update
  • Add DJL FasterTransformer image uris
  • EMR step runtime role support
  • locations for EMR configuration and Spark dependencies
  • Adding support for 1P Algorithms in ZAZ, ZRH, HYD, MEL

Documentation Changes

  • Update FeatureGroup kms key id documentation
Changelog

Sourced from sagemaker's changelog.

v2.141.0 (2023-03-24)

Features

  • AutoGluon 0.7.0 image_uris update
  • Add DJL FasterTransformer image uris
  • EMR step runtime role support
  • locations for EMR configuration and Spark dependencies
  • Adding support for 1P Algorithms in ZAZ, ZRH, HYD, MEL

Documentation Changes

  • Update FeatureGroup kms key id documentation

v2.140.1 (2023-03-21)

Bug Fixes and Other Changes

  • Fix cross account register model
  • Handle instance support for Hugging Face tests
  • Upgrade apache-airflow-providers-amazon version
  • build(deps): bump apache-airflow from 2.4.1 to 2.5.1
  • Mark test_create_model_package test for xfail
  • Disable module-not-measured warnings to avoid clutter in build logs

v2.140.0 (2023-03-17)

Features

  • SDK changes for TRCOMP support

Bug Fixes and Other Changes

  • [Feature - Hugging Face] Update Transformers 4.26 - PyTorch 1.13.1 Image uri

v2.139.0 (2023-03-15)

Features

  • Add XGBoost framework 1.7-1 version

Bug Fixes and Other Changes

  • Fix image_uris.retrieve() function to return ValueError when framework is not allowed for an instance_type

v2.138.0 (2023-03-13)

Features

  • Jumpstart training metrics

... (truncated)

Commits
  • e3d1233 prepare release v2.141.0
  • 9946d67 feature: AutoGluon 0.7.0 image_uris update (#3746)
  • 6e5cd23 feature: Add DJL FasterTransformer image uris (#3709)
  • 04e3f60 feature: EMR step runtime role support (#3703)
  • c02d74b documentation: Update FeatureGroup kms key id documentation (#3704)
  • 4fb7c01 feature: locations for EMR configuration and Spark dependencies (#3486)
  • e22ccb4 feature: Adding support for 1P Algorithms in ZAZ, ZRH, HYD, MEL (#3724)
  • 6c5c040 update development version to v2.140.2.dev0
  • 6ce0d99 prepare release v2.140.1
  • 1f37c6d fix: Fix cross account register model (#3726)
  • Additional commits viewable in compare view


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github-actions[bot] commented 1 year ago

Current build status

codecov[bot] commented 1 year ago

Codecov Report

Patch coverage: 98.55% and project coverage change: -0.07 :warning:

Comparison is base (9d16650) 95.60% compared to head (a518ddc) 95.53%.

Additional details and impacted files ```diff @@ Coverage Diff @@ ## main #860 +/- ## ========================================== - Coverage 95.60% 95.53% -0.07% ========================================== Files 187 187 Lines 4980 5063 +83 Branches 273 279 +6 ========================================== + Hits 4761 4837 +76 - Misses 141 147 +6 - Partials 78 79 +1 ``` | Flag | Coverage Δ | | |---|---|---| | unittests | `95.53% <98.55%> (-0.07%)` | :arrow_down: | Flags with carried forward coverage won't be shown. [Click here](https://docs.codecov.io/docs/carryforward-flags?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#carryforward-flags-in-the-pull-request-comment) to find out more. | [Impacted Files](https://codecov.io/gh/openproblems-bio/openproblems/pull/860?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio) | Coverage Δ | | |---|---|---| | [...ration/batch\_integration\_embed/metrics/cc\_score.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/860?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9lbWJlZC9tZXRyaWNzL2NjX3Njb3JlLnB5) | `100.00% <ø> (ø)` | | | [...n/batch\_integration\_embed/metrics/iso\_label\_sil.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/860?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9lbWJlZC9tZXRyaWNzL2lzb19sYWJlbF9zaWwucHk=) | `100.00% <ø> (ø)` | | | [...ntegration/batch\_integration\_embed/metrics/kBET.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/860?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9lbWJlZC9tZXRyaWNzL2tCRVQucHk=) | `100.00% <ø> (ø)` | | | [...integration/batch\_integration\_embed/metrics/pcr.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/860?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9lbWJlZC9tZXRyaWNzL3Bjci5weQ==) | `100.00% <ø> (ø)` | | | [...ation/batch\_integration\_embed/metrics/sil\_batch.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/860?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9lbWJlZC9tZXRyaWNzL3NpbF9iYXRjaC5weQ==) | `100.00% <ø> (ø)` | | | [...tion/batch\_integration\_embed/metrics/silhouette.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/860?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9lbWJlZC9tZXRyaWNzL3NpbGhvdWV0dGUucHk=) | `100.00% <ø> (ø)` | | | [...ch\_integration\_feature/metrics/hvg\_conservation.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/860?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9mZWF0dXJlL21ldHJpY3MvaHZnX2NvbnNlcnZhdGlvbi5weQ==) | `100.00% <ø> (ø)` | | | [...tegration/batch\_integration\_graph/methods/bbknn.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/860?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9ncmFwaC9tZXRob2RzL2Jia25uLnB5) | `100.00% <ø> (ø)` | | | [...egration/batch\_integration\_graph/methods/combat.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/860?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9ncmFwaC9tZXRob2RzL2NvbWJhdC5weQ==) | `100.00% <ø> (ø)` | | | [...gration/batch\_integration\_graph/methods/fastmnn.py](https://codecov.io/gh/openproblems-bio/openproblems/pull/860?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio#diff-b3BlbnByb2JsZW1zL3Rhc2tzL19iYXRjaF9pbnRlZ3JhdGlvbi9iYXRjaF9pbnRlZ3JhdGlvbl9ncmFwaC9tZXRob2RzL2Zhc3Rtbm4ucHk=) | `100.00% <ø> (ø)` | | | ... and [82 more](https://codecov.io/gh/openproblems-bio/openproblems/pull/860?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=openproblems-bio) | | Help us with your feedback. 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dependabot[bot] commented 1 year ago

Superseded by #864.