openproblems-bio / openproblems

Formalizing and benchmarking open problems in single-cell genomics
MIT License
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Add cxg_immune_cell_atlas dataset to common test resources #907

Closed lazappi closed 1 month ago

lazappi commented 1 month ago

Describe your changes

Adds the CELLxGENE immune cell atlas as a new common test resource. This is required for adding foundation models to tasks which require human data and (for at least the batch integration task) the .obsm["X_pca"] slot to be filled.

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