openproblems-bio / task_perturbation_prediction

A benchmark on predicting how small molecules change gene expression in different cell types.
https://openproblems.bio/results/perturbation_prediction/
MIT License
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add sc data preprocessing #77

Closed szalata closed 2 weeks ago

szalata commented 1 month ago

Describe your changes

We want to be able to add methods that operate on single-cell expression data instead of pseudobulk dge analysis results, so "sc_train_h5ad", "sc_test_h5ad" were added. I haven't rerun it for testing.

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