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openrif / vivo-isf-ontology

The "VIVO-ISF Ontology" is an OWL2 representation of the VIVO-ISF Data Standard
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single terms with very different labels #751

Open TomConlin opened 5 years ago

TomConlin commented 5 years ago

from 2018 Apr 24 Hi All

Sorry for this hit and run issue but I can't look into where it should go.

We import ero.owl for dipper models

ero.owl borrows SWO terms

the IRI http://www.ebi.ac.uk/efo/swo/SWO_0000012

do not resolve, so no ground truth

in ontobee_SWO http://www.ebi.ac.uk/efo/swo/SWO_0000012 is for "Java"

in ontobee_ERO http://www.ebi.ac.uk/efo/swo/SWO_0000012 is for "AMDIS"

in the ero.owl file we use, it has both

meanwhile back in sourceforge...

https://sourceforge.net/projects/theswo/files/

says it is "AMDIS"

have not located a source with a single 'Java' yet (stopped trying)

I doubt any of these matter in dipper but staunching the nonsense would be good.

Ontologists who puckered up at SWO_0000012 in the ERO may also enjoy:

Warning competing labels for SWO_0000012
AMDIS
and
 Java
Warning competing labels for SWO_0000091
CMA
and
 ActionScript
Warning competing labels for SWO_0000094
CRLMM algorithm
and
 Assembly
Warning competing labels for SWO_0000095
Continuous Wavelet Transform (CWT)-based peak detection algorithm
and
 C
Warning competing labels for SWO_0000097
Category analysis
and
 C++
Warning competing labels for SWO_0000106
PCMG
and
 Groovy
Warning competing labels for SWO_0000108
Chi-square
and
 JavaScript
Warning competing labels for SWO_0000110
distance calculation objective
and
 Lisp
Warning competing labels for SWO_0000112
BCRANK
and
 Maple
Warning competing labels for SWO_0000113
Cosmo
and
 Mathematica
Warning competing labels for SWO_0000114
F test
and
 Pascal
Warning competing labels for SWO_0000118
Non-linear functional regression model
and
 Python
Warning competing labels for SWO_0000123
Complex Estimation Algorithm
and
 Scheme
Warning competing labels for SWO_0000127
Discriminant Fuzzy Pattern Algorithm
and
 Turing
Warning competing labels for SWO_0000128
DFW
and
 Verilog
Warning competing labels for SWO_0000129
digital gene expression (DGE) datasets
and
 VHDL
Warning competing labels for SWO_0000162
Gamma Gamma Model
and
 Excel
mjaved495 commented 5 years ago

A small but important correction: Though, reuse of local-names is not a common practice, but they have slightly different namespaces (which makes them unique/distinct URIs).

http://www.ebi.ac.uk/swo/SWO_0000012 is for "Java" http://www.ebi.ac.uk/efo/swo/SWO_0000012 is for "AMDIS"