Closed CarolineMorton closed 3 years ago
This PR aims to make this a simple command line tool that can be called within job runner and locally.
It looks in the yaml for 2 keys
inputs
config
The test_json_1.json is a json version of the yaml below:
test_json_1.json
inputs: ["tests/test_data/test_data.csv"] config: simple_2_way_tabs: tab_type: 2-way variables: [sex, ageband, copd] death_2_way_tab: tab_type: target-2-way variables: [sex, ageband, copd] target: death grouped_by_sex: tab_type: groupby-2-way variables: [ageband, copd, death] groupby: sex
Safetab can be called from the command line with `python entrypoint.py "tests/test_json_configs/test_json_1.json" for that example.
This PR aims to make this a simple command line tool that can be called within job runner and locally.
It looks in the yaml for 2 keys
inputs- input filesconfig- this is the table configuration.The
test_json_1.jsonis a json version of the yaml below:Safetab can be called from the command line with `python entrypoint.py "tests/test_json_configs/test_json_1.json" for that example.