opensafely-core / opencodelists

OpenCodelists is an open platform for creating and sharing codelists of clinical terms and drugs.
https://www.opencodelists.org
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Convert some Y-codes to SNOMED codes #1291

Closed inglesp closed 2 years ago

inglesp commented 2 years ago

TPP use Y-codes (codes beginning with "Y") for concepts that do not (yet) have a CTV3 code.

There is a table in the TPP database called YCodeToSnomedMapping that contains mappings between Y-codes and SNOMED codes.

@andrewscolm has requested the equivalent SNOMED codes for all Y-codes in this codelist, as well as for these three:

rebkwok commented 2 years ago

@andrewscolm These are the equivalent SNOMED codes for the Y codes in the codelist. The 3 additional ethnicity ones do not have entries in the TPP YCodeToSnomedMapping table.

SNOMED CTV3ID CTV3PreferredTermDesc
1240581000000104 Y20d1 SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) RNA (ribonucleic acid) detection result positive
1240391000000107 Y213a Antigen of 2019-nCoV (novel coronavirus)
1300721000000109 Y228d Coronavirus disease 19 caused by severe acute respiratory syndrome coronavirus 2 confirmed by laboratory test (situation)
1240581000000104 Y23f7 SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) detection result positive
1321301000000101 Y240b SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) RNA (ribonucleic acid) qualitative existence in specimen
1324601000000106 Y2a3b SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) RNA (ribonucleic acid) detection result positive
1322781000000102 Y269d SARS-CoV-2 (severe acute respiratory syndrome coronavirus 2) antigen detection result positive