While vaccines remain the best strategy to prevent COVID-19, mAbs could potentially benefit certain vulnerable populations before or after exposure to SARS-CoV-2, such as the unvaccinated or recently vaccinated high-risk patients.
I cant knot the report mabs_and_antivirals_coverage_report.Rmd without errors. Unfortunately I get the same error message that we got when you ran it on your computer – and I dont understand what the problem is.
Error in `include_graphics()`:
! Cannot find the file(s): "_wip/figures/figure_cum_eligiblity.png"
Backtrace:
1. knitr::include_graphics(fs::path(output_dir_rmd, "figures", "figure_cum_eligiblity.png"))
Execution halted
But the general setup to have a work in progress report locally looks good! I think you added some paths to the updated .gitignore file that wont make a difference (e.g., reports/coverage/mabs_and_antivirals_coverage_report.html as it's already known to git).
I think the main ones you need are the following, although I have to admit that I'm struggeling to fully understand everything that's going on in this repo.
Thanks Milan, i think perhaps i updated the file names after you checked in a final commit. They switches the file usage in the report away from the "_wip" files we added before. Should work fine for knitting through successfully now.
Thanks Milan, i think perhaps i updated the file names after you checked in a final commit. They switches the file usage in the report away from the "_wip" files we added before. Should work fine for knitting through successfully now.