Open sebbacon opened 4 years ago
Code list from LSHTM:
@brianmackenna Are you able to sense check these existing code lists? Do you think there is any point running our own with what we already have from OP?
Here's a steroid notebook I prepared earlier! These aren't directly comparabale - finalising list will depend on the criteria we hammer out.
Quick skim but keen for @inglesp view - I think our SnoMed/dm+d generation process might be more efficient. Updates are applied weekly and we have already automated links to prescribing data plus all the fields in dm+d.
@brianmackenna I don't have enough context to understand what might be more efficient. Chat on the phone?
I have reviewed the xlsx file above and I propose we generate code lists using our dm+d databases and where an previously curated codelist exists we use this for sense/checking validation. Our dm+d databases gve us advantage of
a) it allows a huge degree of automation
b) I think the dm+d is more comprehensive and is used in TPP (although it sits within Multilex)
c) Our database updates on a weekly basis
d) it allows us to use all fields in the dm+d to make our list more specific e.g. All preparations starting with BNF code 0501
that are administered is a solutioninjection
(have added new issue ebmdatalab/tpp-sql-notebook#48 for capturing consensus around using dynamic medicine codelists)
Steroids specifically discussed on a call today with DataLab @CarolineMorton @amirmehrkar @alexwalkercebm etc and @hmcd
We can align the "replacement steroids" (note they are also used for acute flares/crisis) and xlsx file above.
We then can apply logic to see if we can distinguish between
Using dose syntax is likely to be long and fiddly so pragmatically we will explore using
Draft definition
DEFINITION:
CODE LISTS: FLEXIBILITY NEEDED BETWEEN STUDIES: EFFECTS ON COHORT SELECTION:
POTENTIAL BIASES:
CLINICAL SIGN OFF & DATE:
EPIDEMIOLOGY SIGN OFF & DATE:
SHARED WITH WIDER TEAM: Yes/No
FINAL SIGN OFF DATE (and apply label)
Distinguish between long term and acute treatment