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opensafely / ics-research

This is the code and configuration for our paper, Inhaled corticosteroid use and risk COVID-19 related death among 966,461 patients with COPD or asthma
https://opensafely.org
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Summary of covariates for ICS study #28

Closed annaschultze closed 4 years ago

annaschultze commented 4 years ago
Covariate Issue Signed off?
ICS (Single Constituent) ebmdatalab/opencorona-ics-research#25 No
Oral Steroids (Single Constituent) ebmdatalab/opensafely-codelist-development#17 No
SABA (Single Constituent) ebmdatalab/opensafely-codelist-development#15 Yes
LABA (Single Constituent) ebmdatalab/opencorona-ics-research#15 No
LAMA (Single Constituent) ebmdatalab/opencorona-ics-research#14 No
LABA + ICS ebmdatalab/opencorona-ics-research#16 No
LABA + LAMA ebmdatalab/opencorona-ics-research#20 No
LABA + LAMA + ICS ebmdatalab/opencorona-ics-research#18 No
LTRA (Single Constituent) ebmdatalab/opencorona-ics-research#17 No
Nebules ebmdatalab/opencorona-ics-research#27 No
Oxygen Therapy ebmdatalab/opencorona-ics-research#19 No
COPD ebmdatalab/opencorona-ics-research#12 No
Other respiratory conditions ebmdatalab/opencorona-ics-research#10 No
Age ebmdatalab/opensafely-risk-factors-research#49 Yes
Sex ebmdatalab/opensafely-risk-factors-research#46 Yes
Smoking status ebmdatalab/opensafely-codelist-development#1 Yes
BMI ebmdatalab/opensafely-risk-factors-research#51 Yes
Ethnicity ebmdatalab/opensafely-codelist-development#7 No
Hypertension ebmdatalab/opensafely-codelist-development#16 No
Ischaemic Heart Disease ebmdatalab/tpp-sql-notebook#83 No
Heart Failure ebmdatalab/tpp-sql-notebook#80 No
Diabetes Mellitus ebmdatalab/opensafely-codelist-development#8 Yes
Cancer ebmdatalab/opensafely-codelist-development#10 Yes
Chronic Respiratory Disease ebmdatalab/opensafely-codelist-development#6 Yes
Asthma ebmdatalab/opensafely-codelist-development#15 Yes
Splenectomy or Sickle Cell ebmdatalab/opensafely-codelist-development#4 Yes
Conditions affecting Immunity ebmdatalab/opensafely-codelist-development#11 Yes
Immunosuppressants ebmdatalab/opensafely-codelist-development#18 No
Organ Transplant Status ebmdatalab/opensafely-codelist-development#9 Yes
Chronic Kidney Disease ebmdatalab/opensafely-risk-factors-research#50 Yes
Primary care consultation rate ebmdatalab/opencorona-ics-research#24 No
Prior hospitalisation ebmdatalab/tpp-sql-notebook#20 No
Prior exacerbation ebmdatalab/opencorona-ics-research#11 No
Vaccination status ebmdatalab/opencorona-ics-research#23 No
annaschultze commented 4 years ago

@brianmackenna we'll need quite a few different drugs, Ian mentioned single LABA, single LAMA, LABA+LAMA+ICS, LTRA, muscarinic antagonists and oral steroids. Plus oxygen therapy (by clinical code rather than drug code). What do you think the best way of organising this is, a single issue and sign off for all or separate?

brianmackenna commented 4 years ago

I think we should do separate issues to some extent in order to record and document all decisions however I will try to keep all notebooks in the same repos. Sound good?

For example I can rename this asthma meds repo and add other lists in, steroid repo is here etc etc

annaschultze commented 4 years ago

@brianmackenna have gone over the list of medications required with Ian, and think the above should now be accurate. I created separate issues for them - apart from nebules as wasn't sure whether this existed separately already.