Test and update examples for 4.0 release

jimmyDunne commented 7 years ago

API Examples (from #1297)

[x] Script to build a template actuators (see PR #541 (Shrinidhi)
[ ] Convert dynamic walker example (C++ @chrisdembia, MATLAB @jimmyDunne)
[x] Convert hopper example (Chris)
[ ] Convert between Millard and Thelen muscle models (Ayman)
[x] Pendulum with markers; output marker locations (James)
[x] Plot muscle curves (James)
[x] Show how to use the DataTable's flatten() and pack() in scripting (James)
[ ] Muscle analysis (@aseth1 and @carmichaelong)
[ ] Point and body kinematics; also report Center of Mass (@aseth1 using OutputReporter)
[ ] States trajectory for custom post-hoc analysis (maybe trapeziodal rule for integration, Chris)
[ ] Update old matlab and python examples (James)
[x] Dump model's connections, inputs and outputs (done by @tkuchida added to Component)

API Examples (not from #1297)

[ ] Working with lists (Matlab/Python) #1465
[ ] Sample code for dealing with enums in Matlab #1456

API Examples (Confluence)

[ ] Performing a Simulation
[ ] Creating your own Analysis
[ ] Creating a Controller
[ ] Creating an Optimization
[ ] Creating a Customized Actuator @chrisdembia
[ ] Creating a Cusomized Muslce Model
[ ] Getting Started as a Developer @chrisdembia https://github.com/opensim-org/opensim-core/issues/2072

Application Examples (Confluence)

Introductory

[ ] Tutorial 1 -Intro to Musculoskeletal Modeling @bspineda
[ ] Tutorial 2 - Simulation and Analysis of a Tendon Transfer Surgery @bspineda
[ ] Tutorial 3 - Scaling, Inverse Kinematics, and Inverse Dynamics @bspineda
[ ] Simulation-Based Design to Prevent Ankle Injuries @nickbianco
[ ] Simulation-Based Design to Reduce Metabolic Cost @nickbianco
[ ] Dynamic Walking Challenge:Go the Distance
[ ] Working with Static Optimization
[ ] Soccer Kick example

Intermediate

[ ] Computed Muscle Control
[ ] Strength of Simulation: Estimating Leg Muscle Forces in Stance and Swing @tkuchida
[ ] Joint Reaction Loads
[ ] Model Editing

Advanced

[ ] Point Kinematics Example redundant with OuputrReporter- update to use OutputReporter
[ ] Pulling out the stops: Designing a muscle for tug-of-war competition
[ ] Sky High: Coordinating Muscles for Optimal Jump Performance (replace AnalyzeTool with ForwardTool in Part C; see #1675)
[ ] From the Ground Up: Building a Passive Dynamic Model @chrisdembia

Wish List

[ ] Building custom joints (Examples of building basic and complicated joints. May include the building and complicated knee and/or shoulder)
[ ] Rajagopal Model example - Build an example or a pipeline to showcase the model
[ ] Seth Shoulder model - Build an example or a pipeline to showcase the model
[ ] Muslce Synergy - example of a muscle synergy analysis
[ ] Scaling - Going from model (without markers) to scaled and running IK (includes reading c3d)
[ ] Evaluate model capacity - Evaluate joint toques and asses if muscles crossing the joint could generate the required forces
[ ] Calculate cost of transport -
[ ] Document hopper example in a confluence page @nickbianco
[ ] Test GUI script for running tug of war in 485 @apoorvar
[ ] Extending a class (controller) in Python (Ayman)
[ ] Optimization of standing balance movements with synergies (Mazen)

tkuchida commented 7 years ago

[ ] MATLAB script for extracting muscle path points, including points on wrapping surfaces if possible.

jenhicks commented 6 years ago

Priorities: Existing examples Examples demonstrating new software capabilities

ShravanTata commented 5 years ago

Hi,

Can we construct CustomJoints using the opensim4.0 Python API? I am having a lot of troubles doing it. Any help is very much appreciated.

Thanks, Shravan

tkuchida commented 5 years ago

@ShravanTata Yes, it is possible. Please see my response in Forum topic 9738. If you are still having difficulties, please provide more details (e.g., a small example of your code) on the Forum.

ShravanTata commented 5 years ago

Hi @tkuchida , thanks for your response. I finally got the CustomJoints working. But I do have a follow up question. Is it possible to extract plots such as moment_arm vs joint_angle from the Python API? If yes, could you point me to a relevant example. Your help is really appreciated.

Thanks, Shravan

tkuchida commented 5 years ago

@ShravanTata You could investigate the MomentArmSolver (https://github.com/opensim-org/opensim-core/blob/master/OpenSim/Simulation/Test/testMomentArms.cpp). Please ask questions about using OpenSim on the User Forum (https://simtk.org/plugins/phpBB/indexPhpbb.php?group_id=91&pluginname=phpBB); GitHub is used for supporting development tasks and tracking issues.

jenhicks commented 5 years ago

Closing, as this is duplicated and more up to date here: https://github.com/opensim-org/sprints/issues/17

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