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openspim / SPIMAcquisition

The Micro-Manager plugin to acquire images with an OpenSPIM setup
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Setup appears invalid. #30

Closed spimager closed 8 years ago

spimager commented 8 years ago

I can't seem to open the SPIMAcquisition plugin at all.

I keep getting the message: Your setup appears invalid, etc. The camera works fine within micromanager and the stage does, too. I have tried updating Fiji, reconfiguring the entire setup and recompiling from source, but I consistently receive the same message.

The error log is:

2015-11-01T12:29:48.787150 tid4768 [IFO,LogManager] Enabled primary log file C:\OpenSPIM.app\CoreLogs\CoreLog20151101T122948_pid4728.txt 2015-11-01T12:29:48.787150 tid4768 [IFO,App] User: Gabriel 2015-11-01T12:29:48.788150 tid4768 [IFO,App] Host: LightSheet 2015-11-01T12:29:48.788150 tid4768 [IFO,App] MM Studio version: 1.4.23 20151030 2015-11-01T12:29:48.788150 tid4768 [IFO,App] MMCore version 8.1.1 2015-11-01T12:29:48.788150 tid4768 [IFO,App] Device API version 65, Module API version 10 2015-11-01T12:29:48.788150 tid4768 [IFO,App] Operating System: Windows 7 (amd64) 6.1 2015-11-01T12:29:48.788150 tid4768 [IFO,App] JVM: Java HotSpot(TM) 64-Bit Server VM, version 1.8.0_45, 64-bit 2015-11-01T12:29:48.801151 tid1668 [IFO,App] Added URL to system class loader: file:/C:/OpenSPIM.app/mmplugins/ 2015-11-01T12:29:48.802151 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\Big.jar!/ 2015-11-01T12:29:48.815152 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\DataBrowser.jar!/ 2015-11-01T12:29:49.437187 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\PixelCalibrator.jar!/ 2015-11-01T12:29:49.446188 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\Recall.jar!/ 2015-11-01T12:29:49.449188 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\SPIMAcquisition-1.0.0-SNAPSHOT.jar!/ 2015-11-01T12:29:49.577195 tid1668 [IFO,App] Installing plugin org.micromanager.browser.Data_Browser... 2015-11-01T12:29:49.577195 tid1668 [IFO,App] Error: Plugin [org.micromanager.browser.Data_Browser] has no menuName field 2015-11-01T12:29:49.577195 tid1668 [IFO,App] org.micromanager.browser.Data_Browser fails to implement static String tooltipDescription. 2015-11-01T12:29:49.578195 tid1668 [IFO,App] Installing plugin org.micromanager.pixelcalibrator.PixelCalibratorPlugin... 2015-11-01T12:29:49.578195 tid1668 [IFO,App] Installing plugin org.micromanager.recall.RecallPlugin... 2015-11-01T12:29:49.579196 tid1668 [IFO,App] Installing plugin spim.SPIMAcquisition... 2015-11-01T12:29:49.579196 tid1668 [IFO,App] Added URL to system class loader: file:/C:/OpenSPIM.app/mmplugins/Acquisition_Tools/ 2015-11-01T12:29:49.579196 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\Acquisition_Tools\AcquireMultipleRegions.jar!/ 2015-11-01T12:29:49.595196 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\Acquisition_Tools\Gaussian.jar!/ 2015-11-01T12:29:49.727204 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\Acquisition_Tools\HCS.jar!/ 2015-11-01T12:29:49.747205 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\Acquisition_Tools\IntelligentAcquisition.jar!/ 2015-11-01T12:29:49.760206 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\Acquisition_Tools\MMTracker.jar!/ 2015-11-01T12:29:49.769206 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\Acquisition_Tools\PatternOverlay.jar!/ 2015-11-01T12:29:49.779207 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\AcquisitionTools\SlideExplorer.jar!/ 2015-11-01T12:29:49.827210 tid1668 [IFO,App] Installing plugin org.micromanager.acquiremultipleregions.AcquireMultipleRegions... 2015-11-01T12:29:49.827210 tid1668 [IFO,App] Installing plugin GaussianTrack... 2015-11-01T12:29:49.827210 tid1668 [IFO,App] Installing plugin org.micromanager.hcs.SiteGenerator... 2015-11-01T12:29:49.827210 tid1668 [IFO,App] Installing plugin org.micromanager.intelligentacquisition.IntelligentAcquisition... 2015-11-01T12:29:49.827210 tid1668 [IFO,App] Installing plugin com.imaging100x.tracker.TrackerControl... 2015-11-01T12:29:49.828210 tid1668 [IFO,App] Installing plugin org.micromanager.patternoverlay.PatternOverlayPlugin... 2015-11-01T12:29:49.828210 tid1668 [IFO,App] Installing plugin org.micromanager.slideexplorer.SlideExplorerPlugin... 2015-11-01T12:29:49.829210 tid1668 [IFO,App] Added URL to system class loader: file:/C:/OpenSPIM.app/mmplugins/Beta/ 2015-11-01T12:29:49.829210 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\Beta\CRISPv2.jar!/ 2015-11-01T12:29:49.842211 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\Beta\SlideExplorer2.jar!/ 2015-11-01T12:29:50.934273 tid1668 [IFO,App] Installing plugin com.asiimaging.CRISPv2.ASI_CRISP_V2... 2015-11-01T12:29:50.934273 tid1668 [IFO,App] Installing plugin org.micromanager.SlideExplorer2... 2015-11-01T12:29:50.934273 tid1668 [IFO,App] Error: Plugin [org.micromanager.SlideExplorer2] has no menuName field 2015-11-01T12:29:50.934273 tid1668 [IFO,App] org.micromanager.SlideExplorer2 fails to implement static String tooltipDescription. 2015-11-01T12:29:50.935273 tid1668 [IFO,App] Added URL to system class loader: file:/C:/OpenSPIM.app/mmplugins/Developer_Tools/ 2015-11-01T12:29:50.935273 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\Developer_Tools\ClojureEditor.jar!/ 2015-11-01T12:29:50.937273 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\Developer_Tools\DLLAutoReloader.jar!/ 2015-11-01T12:29:51.024278 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\Developer_Tools\SequenceBufferMonitor.jar!/ 2015-11-01T12:29:51.028278 tid1668 [IFO,App] Installing plugin org.micromanager.clojureeditor.ClojureEditorPlugin... 2015-11-01T12:29:51.028278 tid1668 [IFO,App] Installing plugin org.micromanager.DLLAutoReloader... 2015-11-01T12:29:51.028278 tid1668 [IFO,App] Error: Plugin [org.micromanager.DLLAutoReloader] has no menuName field 2015-11-01T12:29:51.028278 tid1668 [IFO,App] org.micromanager.DLLAutoReloader fails to implement static String tooltipDescription. 2015-11-01T12:29:51.028278 tid1668 [IFO,App] Installing plugin org.micromanager.plugins.sequencebuffermonitor.SequenceBufferMonitor... 2015-11-01T12:29:51.028278 tid1668 [IFO,App] Added URL to system class loader: file:/C:/OpenSPIM.app/mmplugins/Device_Control/ 2015-11-01T12:29:51.029278 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\Device_Control\ASIdiSPIM.jar!/ 2015-11-01T12:29:51.216289 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\Device_Control\AutoLase.jar!/ 2015-11-01T12:29:51.240291 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\Device_Control\CRISP.jar!/ 2015-11-01T12:29:51.248291 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\Device_Control\MightexPolygon.jar!/ 2015-11-01T12:29:51.300294 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\Device_Control\MultiCamera.jar!/ 2015-11-01T12:29:51.310295 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\Device_Control\pgFocus.jar!/ 2015-11-01T12:29:51.325295 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\Device_Control\Projector.jar!/ 2015-11-01T12:29:51.378298 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\Device_Control\StageControl.jar!/ 2015-11-01T12:29:51.404300 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\Device_Control\WhiteBalance.jar!/ 2015-11-01T12:29:51.411300 tid1668 [IFO,App] Installing plugin org.micromanager.asidispim.ASIdiSPIM... 2015-11-01T12:29:51.411300 tid1668 [IFO,App] Installing plugin ch.epfl.leb.autolase.AutoLasePlugin... 2015-11-01T12:29:51.411300 tid1668 [IFO,App] Installing plugin org.micromanager.CRISP.CRISP... 2015-11-01T12:29:51.411300 tid1668 [IFO,App] Installing plugin org.micromanager.polygon.PolygonPlugin... 2015-11-01T12:29:51.412300 tid1668 [IFO,App] Installing plugin org.micromanager.multicamera.MultiCamera... 2015-11-01T12:29:51.412300 tid1668 [IFO,App] Installing plugin edu.umassmed.pgfocus.pgFocus... 2015-11-01T12:29:51.412300 tid1668 [IFO,App] Installing plugin org.micromanager.projector.ProjectorPlugin... 2015-11-01T12:29:51.412300 tid1668 [IFO,App] Installing plugin org.micromanager.stagecontrol.StageControl... 2015-11-01T12:29:51.412300 tid1668 [IFO,App] Installing plugin PMQI.AutoWB... 2015-11-01T12:29:51.412300 tid1668 [IFO,App] Added URL to system class loader: file:/C:/OpenSPIM.app/mmplugins/On-The-Fly_Processors/ 2015-11-01T12:29:51.412300 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\On-The-Fly_Processors\ImageFlipper.jar!/ 2015-11-01T12:29:51.418301 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\On-The-Fly_Processors\MultiChannelShading.jar!/ 2015-11-01T12:29:51.434302 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmplugins\On-The-Fly_Processors\SplitView.jar!/ 2015-11-01T12:29:51.443302 tid1668 [IFO,App] Installing plugin org.micromanager.newimageflipper.NewTaggedImageFlipper... 2015-11-01T12:29:51.446302 tid1668 [IFO,App] Installing plugin org.micromanager.multichannelshading.MultiChannelShading... 2015-11-01T12:29:51.446302 tid1668 [IFO,App] Installing plugin org.micromanager.splitview.SplitView... 2015-11-01T12:29:51.469304 tid1668 [IFO,App] Added URL to system class loader: file:/C:/OpenSPIM.app/mmautofocus/ 2015-11-01T12:29:51.469304 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmautofocus\HardwareFocusExtender.jar!/ 2015-11-01T12:29:51.471304 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmautofocus\MMAutofocus.jar!/ 2015-11-01T12:29:51.473304 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmautofocus\MMAutofocusDuo.jar!/ 2015-11-01T12:29:51.474304 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmautofocus\MMAutofocusTB.jar!/ 2015-11-01T12:29:51.476304 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmautofocus\MMNullAutofocus.jar!/ 2015-11-01T12:29:51.477304 tid1668 [IFO,App] Added URL to system class loader: jar:file:C:\OpenSPIM.app\mmautofocus\MMOughtaFocus.jar!/ 2015-11-01T12:29:51.482304 tid1668 [IFO,App] Attempting to install autofocus plugin HardwareFocusExtender 2015-11-01T12:29:51.483304 tid1668 [IFO,App] Attempting to install autofocus plugin Autofocus 2015-11-01T12:29:51.484304 tid1668 [IFO,App] Attempting to install autofocus plugin AutofocusDuo 2015-11-01T12:29:51.484304 tid1668 [IFO,App] Attempting to install autofocus plugin AutofocusTB 2015-11-01T12:29:51.485305 tid1668 [IFO,App] Attempting to install autofocus plugin NullAutofocus 2015-11-01T12:29:51.485305 tid1668 [IFO,App] Attempting to install autofocus plugin OughtaFocus 2015-11-01T12:30:00.472819 tid4768 [IFO,App] Finished waiting for plugins to load 2015-11-01T12:30:00.481819 tid4768 [IFO,Core] Did unload all devices 2015-11-01T12:30:01.475876 tid4768 [IFO,Core] Did load device Andor sCMOS Camera from AndorSDK3; label = Andor sCMOS Camera 2015-11-01T12:30:01.478876 tid4768 [IFO,Core] Did load device Picard Twister from PicardStage; label = Picard Twister 2015-11-01T12:30:01.478876 tid4768 [IFO,Core] Did load device Picard Z Stage from PicardStage; label = Picard Z Stage 2015-11-01T12:30:01.478876 tid4768 [IFO,Core] Did load device Picard XY Stage from PicardStage; label = Picard XY Stage 2015-11-01T12:30:01.636885 tid4768 [IFO,Core] Will initialize 4 devices 2015-11-01T12:30:01.636885 tid4768 [IFO,Core] Will initialize device Andor sCMOS Camera 2015-11-01T12:30:04.970076 tid4768 [IFO,dev:Andor sCMOS Camera] [CEventsManager::Initialise] Events are Not Implemented 2015-11-01T12:30:05.314096 tid4768 [IFO,Core] Did initialize device Andor sCMOS Camera 2015-11-01T12:30:05.314096 tid4768 [IFO,Core] Default camera set to Andor sCMOS Camera 2015-11-01T12:30:05.314096 tid4768 [IFO,Core] Will initialize device Picard Twister 2015-11-01T12:30:05.317096 tid4768 [IFO,Core] Did initialize device Picard Twister 2015-11-01T12:30:05.317096 tid4768 [IFO,Core] Will initialize device Picard Z Stage 2015-11-01T12:30:05.349098 tid4768 [IFO,Core] Did initialize device Picard Z Stage 2015-11-01T12:30:05.349098 tid4768 [IFO,Core] Will initialize device Picard XY Stage 2015-11-01T12:30:05.413101 tid4768 [IFO,Core] Did initialize device Picard XY Stage 2015-11-01T12:30:05.413101 tid4768 [IFO,Core] Default xy stage set to Picard XY Stage 2015-11-01T12:30:05.413101 tid4768 [IFO,Core] Finished initializing 4 devices 2015-11-01T12:30:05.413101 tid4768 [IFO,Core] Default camera set to Andor sCMOS Camera 2015-11-01T12:30:05.506106 tid4768 [IFO,Core] Did update system state cache 2015-11-01T12:30:05.511107 tid4768 [IFO,App] Updating GUI; config pad = true; from cache = false 2015-11-01T12:30:05.608112 tid4768 [IFO,Core] Did update system state cache 2015-11-01T12:30:05.608112 tid4768 [IFO,App] Finished updating GUI 2015-11-01T12:30:05.653115 tid4768 [IFO,App] [ ] Sourced file: inline evaluation of: ``# Generated by Configurator on Sun Nov 01 12:09:03 AEDT 2015 # Reset Propert . . . '' Token Parsing Error: Lexical error at line 1, column 2. Encountered: " " (32), after : "#": [ ] in Thread[AWT-EventQueue-0,6,main] [ ] at bsh.Interpreter.eval(Unknown Source) [ ] at bsh.Interpreter.eval(Unknown Source) [ ] at bsh.Interpreter.eval(Unknown Source) [ ] at org.micromanager.MMStudio.executeStartupScript(MMStudio.java:1688) [ ] at org.micromanager.MMStudio.initializationSequence(MMStudio.java:484) [ ] at org.micromanager.MMStudio.(MMStudio.java:374) [ ] at MMStudioPlugin$1.run(MMStudioPlugin.java:76) [ ] at java.awt.event.InvocationEvent.dispatch(InvocationEvent.java:311) [ ] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:756) [ ] at java.awt.EventQueue.access$500(EventQueue.java:97) [ ] at java.awt.EventQueue$3.run(EventQueue.java:709) [ ] at java.awt.EventQueue$3.run(EventQueue.java:703) [ ] at java.security.AccessController.doPrivileged(Native Method) [ ] at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75) [ ] at java.awt.EventQueue.dispatchEvent(EventQueue.java:726) [ ] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201) [ ] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116) [ ] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105) [ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) [ ] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) [ ] at java.awt.EventDispatchThread.run(EventDispatchThread.java:82) 2015-11-01T12:30:05.823125 tid4768 [IFO,App] Rebuilding config group table 2015-11-01T12:30:05.824125 tid4768 [IFO,App] Finished rebuilding config group table 2015-11-01T12:30:17.429788 tid4768 [IFO,App] Error: Coercing position count to 1 2015-11-01T12:30:19.421902 tid4768 [IFO,App] Stop called in LiveModeTimer, first attempt 2015-11-01T12:30:19.447904 tid2524 [IFO,dev:Andor sCMOS Camera] [svc] SeqAcquisition interrupted by the user 2015-11-01T12:30:19.535909 tid2524 [IFO,dev:Andor sCMOS Camera] Sequence thread exiting 2015-11-01T12:30:19.715919 tid4768 [IFO,App] Waiting for timer to stop 2015-11-01T12:30:19.736920 tid4768 [IFO,App] Finished waiting for timer to stop 2015-11-01T12:30:19.736920 tid4768 [IFO,App] Waiting for live mode display thread 2015-11-01T12:30:19.737921 tid4768 [IFO,App] Finished waiting for live mode display thread 2015-11-01T12:30:22.965105 tid4768 [IFO,App] Refreshing config group table 2015-11-01T12:30:22.966105 tid4768 [IFO,App] Finished refreshing config group table 2015-11-01T12:30:22.966105 tid4768 [IFO,App] Updating GUI; config pad = false; from cache = false 2015-11-01T12:30:22.986106 tid4768 [IFO,App] Finished updating GUI 2015-11-01T12:30:24.381186 tid4768 [IFO,App] Stop called in LiveModeTimer, first attempt 2015-11-01T12:30:24.443190 tid5740 [IFO,dev:Andor sCMOS Camera] [svc] SeqAcquisition interrupted by the user 2015-11-01T12:30:24.486192 tid5740 [IFO,dev:Andor sCMOS Camera] Sequence thread exiting 2015-11-01T12:30:24.643201 tid4768 [IFO,App] Waiting for timer to stop 2015-11-01T12:30:24.648201 tid4768 [IFO,App] Finished waiting for timer to stop 2015-11-01T12:30:24.649201 tid4768 [IFO,App] Waiting for live mode display thread 2015-11-01T12:30:24.649201 tid4768 [IFO,App] Finished waiting for live mode display thread 2015-11-01T12:30:24.773209 tid4768 [IFO,App] Refreshing config group table 2015-11-01T12:30:24.806210 tid4768 [IFO,App] Finished refreshing config group table 2015-11-01T12:30:24.806210 tid4768 [IFO,App] Updating GUI; config pad = false; from cache = false 2015-11-01T12:30:24.844213 tid4768 [IFO,App] Finished updating GUI 2015-11-01T12:30:27.055339 tid4768 [IFO,App] Plugin command: Acquire SPIM image 2015-11-01T12:30:28.678432 tid4768 [IFO,Core] Will initialize 4 devices 2015-11-01T12:30:28.678432 tid4768 [IFO,Core] Will initialize device Andor sCMOS Camera 2015-11-01T12:30:28.678432 tid4768 [IFO,Core] Did initialize device Andor sCMOS Camera 2015-11-01T12:30:28.678432 tid4768 [IFO,Core] Default camera set to Andor sCMOS Camera 2015-11-01T12:30:28.678432 tid4768 [IFO,Core] Will initialize device Picard Twister 2015-11-01T12:30:28.709434 tid4768 [IFO,Core] Did initialize device Picard Twister 2015-11-01T12:30:28.709434 tid4768 [IFO,Core] Will initialize device Picard Z Stage 2015-11-01T12:30:28.741435 tid4768 [IFO,Core] Did initialize device Picard Z Stage 2015-11-01T12:30:28.741435 tid4768 [IFO,Core] Will initialize device Picard XY Stage 2015-11-01T12:30:28.805439 tid4768 [IFO,Core] Did initialize device Picard XY Stage 2015-11-01T12:30:28.805439 tid4768 [IFO,Core] Default xy stage set to Picard XY Stage 2015-11-01T12:30:28.805439 tid4768 [IFO,Core] Finished initializing 4 devices 2015-11-01T12:30:28.805439 tid4768 [IFO,App] Defined uncalibrated pixel size (1:1). 2015-11-01T12:30:28.874443 tid4768 [IFO,App] Thread 16 (AWT-EventQueue-0) terminated with uncaught exception 2015-11-01T12:30:28.874443 tid4768 [IFO,App] java.lang.IllegalArgumentException: makeStageSliderSafe given a non-Stage device 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at spim.SPIMAcquisition.makeStageSlider(SPIMAcquisition.java:1049) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at spim.SPIMAcquisition.initUI(SPIMAcquisition.java:361) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at spim.SPIMAcquisition.show(SPIMAcquisition.java:218) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at org.micromanager.pluginmanagement.PluginManager.displayPlugin(PluginManager.java:114) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at org.micromanager.pluginmanagement.PluginManager.access$100(PluginManager.java:22) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at org.micromanager.pluginmanagement.PluginManager$2.run(PluginManager.java:64) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at org.micromanager.utils.GUIUtils$3.actionPerformed(GUIUtils.java:362) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:2022) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2346) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:402) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:259) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at javax.swing.AbstractButton.doClick(AbstractButton.java:376) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:833) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:877) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.AWTEventMulticaster.mouseReleased(AWTEventMulticaster.java:289) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.Component.processMouseEvent(Component.java:6525) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at javax.swing.JComponent.processMouseEvent(JComponent.java:3324) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.Component.processEvent(Component.java:6290) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.Container.processEvent(Container.java:2234) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.Component.dispatchEventImpl(Component.java:4881) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.Container.dispatchEventImpl(Container.java:2292) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.Component.dispatchEvent(Component.java:4703) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4898) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.LightweightDispatcher.processMouseEvent(Container.java:4533) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.LightweightDispatcher.dispatchEvent(Container.java:4462) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.Container.dispatchEventImpl(Container.java:2278) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.Window.dispatchEventImpl(Window.java:2750) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.Component.dispatchEvent(Component.java:4703) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.EventQueue.dispatchEventImpl(EventQueue.java:758) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.EventQueue.access$500(EventQueue.java:97) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.EventQueue$3.run(EventQueue.java:709) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.EventQueue$3.run(EventQueue.java:703) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.security.AccessController.doPrivileged(Native Method) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:86) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.EventQueue$4.run(EventQueue.java:731) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.EventQueue$4.run(EventQueue.java:729) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.security.AccessController.doPrivileged(Native Method) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.security.ProtectionDomain$1.doIntersectionPrivilege(ProtectionDomain.java:75) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.EventQueue.dispatchEvent(EventQueue.java:728) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:201) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:116) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:105) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:93) 2015-11-01T12:30:28.874443 tid4768 [IFO,App] at java.awt.EventDispatchThread.run(EventDispatchThread.java:82) 2015-11-01T12:30:30.594541 tid5080 [IFO,dev:Andor sCMOS Camera] [ThreadRun] Exception caught with Message: Exception[AT_ERR_HARDWARE_OVERFLOW] thrown: Internal Buffer Overflow: Slow Data retrieval from card/camera 2015-11-01T12:30:30.594541 tid5080 [IFO,dev:Andor sCMOS Camera] [ThreadRun] WaitBuffer returned false, no data! 2015-11-01T12:30:30.621543 tid4768 [IFO,App] Stop called in LiveModeTimer, first attempt 2015-11-01T12:30:31.130572 tid5080 [IFO,dev:Andor sCMOS Camera] [ThreadRun] WaitBuffer returned false, no data! 2015-11-01T12:30:31.130572 tid5080 [IFO,dev:Andor sCMOS Camera] [svc] SeqAcquisition interrupted by the user 2015-11-01T12:30:31.130572 tid5080 [IFO,dev:Andor sCMOS Camera] [MySequenceThread::svc] Unknown Error occured 2015-11-01T12:30:31.173575 tid5080 [IFO,dev:Andor sCMOS Camera] Sequence thread exiting 2015-11-01T12:30:31.354585 tid4768 [IFO,App] Waiting for timer to stop 2015-11-01T12:30:31.360585 tid4768 [IFO,App] Finished waiting for timer to stop 2015-11-01T12:30:31.360585 tid4768 [IFO,App] Waiting for live mode display thread 2015-11-01T12:30:31.360585 tid4768 [IFO,App] Finished waiting for live mode display thread

hkmoon commented 8 years ago

Hi @spimager

Sorry for the late response. This bug will be fixed in the next release. We are trying to release SPIMAcquisition plugin with HDF5 export and Anti-Drift before Christmas.

Cheers, HongKee