opentargets / orchestration

Open Targets pipeline orchestration layer

Apache License 2.0

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fix(vep_operator): change dtype for pos to int for correct sorting #38

Closed project-defiant closed 1 month ago

project-defiant commented 1 month ago

Rationale

This PR fixes isssue issue with vep variant annotation operator spotted on batch job, that caused the partitionned vcf files were not sorted correctly before annotating them by vep.

See the exact errors of failed jobs in logs

Fixes

This PR changes the POS field in partitionned vcfs to int so the partitionning is done correctly.