rahulmaurya1507@gmail.com

[rahulmaurya1507]

I am trying to run the standalone-deployment-platform repository to access the open-targets UI from my local.

This is the docker compose content for ot-es container which is causing some java.lang.UnsupportedOperationException: sun.misc.Unsafe unavailable error. I have tried to resolve this issue but have been unsuccessful and got nowhere close to resolving it.

  elasticsearch:
    image: ${OTOPS_PROFILE_ELASTIC_SEARCH_DOCKER_IMAGE_NAME}:${OTOPS_PROFILE_ELASTIC_SEARCH_DOCKER_IMAGE_TAG}
    container_name: ot-es
    ports:
      - "9200:9200"
      - "9300:9600"
    environment:
      - "path.data=/usr/share/opensearch/data"
      - "path.logs=/usr/share/opensearch/logs"
      - "cluster.name=ot-es-cluster"
      - "network.host=0.0.0.0"
      - "discovery.type=single-node"
      - "discovery.seed_hosts=[]"
      - "bootstrap.memory_lock=true"
      - "search.max_open_scroll_context=5000"
      - "DISABLE_SECURITY_PLUGIN=true"
      - "logger.level=DEBUG"
      - "OPENSEARCH_JAVA_OPTS=-Xms2g -Xmx4g"
    volumes:
      - "esdata:/usr/share/opensearch/data"
    ulimits:
      memlock: -1
      nofile: 65536
    healthcheck:
      test: ["CMD", "curl", "http://localhost:9200/_cluster/health?wait_for_status=green"]
      interval: 30s
      timeout: 30s
      retries: 5
      start_period: 30s
    networks:
      - ot-platform

I am attaching the logs generated from the ot-es container for the referance. Kindly help me with this regards. @ ot-es.log

[mbdebian]

Thanks for submitting the issue @rahulmaurya1507

It looks like a problem with accessing the underlying filesystem from the container through the docker volume.

Would you mind providing more context, e.g. profile being used, host OS and version, etc?

Thanks

[rahulmaurya1507]

Thank you for your prompt response.

Sharing additional details:

1. Profiles: I used multiple profiles config.dev, config.2403, config.2406.
2. OS & Version: Ubuntu 22.04 and Ubuntu 24.04.
3. Docker Version: 27.2.1, build 9e34c9b

After trying multiple profiles and trying with update compose file with the help of ChatGPT for a possible solution related to Netty (one example update in environment: "OPENSEARCH_JAVA_OPTS=-Xms2g -Xmx4g -Dio.netty.noUnsafe=true --add-opens=java.base/jdk.internal.misc=ALL-UNNAMED") and other similar possible updates, but I could not make it work.

GPT was giving me possible solutions based on what I had given as errors present in the shared log file.

Please do let me know if any additional information is required.

[kenibrewer]

I've been getting the same error messages as well. Also from Ubuntu 22.04 but using docker version 24.0.7.

[kenibrewer]

Here are the logs of what I'm getting with my deploy. It also includes the java.lang.UnsupportedOperationException: sun.misc.Unsafe unavailable message.

ot-es.log

[rahulmaurya1507]

Dear @mbdebian, has there been any update in the issue? I tried resolving it but still no success.

[remo87]

it seems like a similar issue to 6

[remo87]

@rahulmaurya1507 Issue 5 seems to something different to your issue but in your case the command chmod 777 -R deployment should work. This is an issue with the folder permissions. We'll create an item to work in a permanent solution for Linux.

[remo87]

@rahulmaurya1507 @kenibrewer we've done a fix that might help you if you pull the latest version

[rahulmaurya1507]

Sounds great. I'll try it out.

Thanks

On Thu, 3 Oct 2024, 20:09 remo87, @.***> wrote:

@rahulmaurya1507 https://github.com/rahulmaurya1507 we've done a fix that might help you if you pull the latest version

— Reply to this email directly, view it on GitHub https://github.com/opentargets/standalone-deployment-platform/issues/5#issuecomment-2391594784, or unsubscribe https://github.com/notifications/unsubscribe-auth/AD46UMBMW4KLLMQC46FEZITZZVJINAVCNFSM6AAAAABORT7OECVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDGOJRGU4TINZYGQ . You are receiving this because you were mentioned.Message ID: @.*** com>

[mbdebian]

This is now addressed