openvar variantValidator issues

openvar / variantValidator

Public repository for VariantValidator project

GNU Affero General Public License v3.0

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issues

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vvta_2024_10 update

#658 John-F-Wagstaff opened 1 day ago
0
Improve intronic variant description handling with differing Alts

#657 John-F-Wagstaff opened 1 day ago
0
Update if possible the alignments for RYBP

#656 Peter-J-Freeman opened 1 week ago
8
Add VRS representations to the VV output

#655 Peter-J-Freeman opened 2 weeks ago
8
Vv ensembl dev susmi

#654 Peter-J-Freeman closed 3 weeks ago
1
Vv ensembl dev susmi

#653 Peter-J-Freeman closed 3 weeks ago
1
Allow c. positions for intergenic variants in the context of a genomic reference sequence

#652 ifokkema opened 1 month ago
12
Alignment issue with NM_017680.6

#651 ifokkema opened 1 month ago
2
Develop

#650 Peter-J-Freeman closed 2 months ago
0
Fix outstanding bugs

#649 Peter-J-Freeman closed 2 months ago
0
Vv ensembl dev susmi

#648 Peter-J-Freeman closed 2 months ago
1
Issue 645

#647 Peter-J-Freeman closed 2 months ago
0
Vv ensembl dev susmi

#646 Peter-J-Freeman closed 2 months ago
1
Something fishy with NM_030582.4 — apparent regression

#645 ifokkema closed 2 weeks ago
24
Variant in an interstitial undefined region fails validation

#644 leicray opened 3 months ago
0
Error on submitting specific sets of NM_016373.4 variants with uncertain locations

#643 John-F-Wagstaff closed 2 months ago
13
Updtes to the expanded repeat code for simple repeats only so far

#642 Peter-J-Freeman closed 2 months ago
6
Develop

#641 Peter-J-Freeman closed 4 months ago
0
Vv ensembl dev susmi

#640 Peter-J-Freeman closed 4 months ago
1
Update SimpleVariantFormatter to handle hybrid descriptions

#639 John-F-Wagstaff closed 4 months ago
1
Handle integer submissions

#638 Peter-J-Freeman closed 4 months ago
1
Add error codes to all warnings

#637 Peter-J-Freeman opened 4 months ago
11
bug fix

#636 Peter-J-Freeman closed 4 months ago
1
Update transcript version warnings to include genome build info for a…

#635 Peter-J-Freeman closed 4 months ago
7
Develop

#634 Peter-J-Freeman closed 4 months ago
1
Vv ensembl dev susmi

#633 Peter-J-Freeman closed 4 months ago
1
Vv ensembl dev susmi

#632 Peter-J-Freeman closed 4 months ago
1
Develop

#631 Peter-J-Freeman closed 4 months ago
0
Vv ensembl dev susmi

#630 Peter-J-Freeman closed 4 months ago
0
Required information for ENST00000305799.8 is missing from the Universal Transcript Archive

#629 ifokkema opened 5 months ago
6
REST APIs broken for LOVD, depending on the internal method used to call it

#628 ifokkema opened 5 months ago
2
variantValidator is not returning a correct gNomen

#627 RanWei1987 closed 4 months ago
10
restore select_transcripts = select

#626 Peter-J-Freeman closed 5 months ago
0
Vv ensembl dev susmi

#625 Peter-J-Freeman closed 5 months ago
0
No warning that transcript version is not the most recent

#624 leicray closed 4 months ago
1
Vv ensembl dev susmi

#623 Peter-J-Freeman closed 6 months ago
0
add code to warn of unsupported transcripts and suggest an alternativ…

#622 Peter-J-Freeman closed 6 months ago
0
Additiona of a new test for genomic ins interval error

#621 Peter-J-Freeman closed 6 months ago
0
Additiona of a new test for genomic ins interval error

#620 Peter-J-Freeman closed 6 months ago
0
Vv ensembl dev susmi

#619 Peter-J-Freeman closed 6 months ago
0
An MD file which describes the HGVS formats we do and do not suppoort and what we are working on

#618 Peter-J-Freeman opened 6 months ago
1
Accept a VCF line

#617 Peter-J-Freeman opened 6 months ago
0
Use the "full" variant description for intronic variants

#616 ifokkema opened 6 months ago
23
Vv ensembl dev susmi

#615 Peter-J-Freeman opened 6 months ago
2
Vv ensembl develop pete

#614 Peter-J-Freeman closed 6 months ago
0
Update develop with latest master version

#613 Peter-J-Freeman closed 6 months ago
0
Select transcripts bug fixed

#612 Peter-J-Freeman closed 6 months ago
0
code to add in gene symbols if tx variant exists but gene symbol is m…

#611 Peter-J-Freeman closed 7 months ago
0
code to add in gene symbols if tx variant exists but gene symbol is m…

#610 Peter-J-Freeman closed 7 months ago
0
start work on https://github.com/openvar/variantValidator/issues/600

#609 Peter-J-Freeman closed 7 months ago
0