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openvar / variantValidator

Public repository for VariantValidator project
GNU Affero General Public License v3.0
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Incorrect reference sequence prefix case causes error #514

Closed leicray closed 1 year ago

leicray commented 1 year ago

Describe the bug A user submitted a genomic variant description containing a prefix with an upper case G instead of a lower case g. This caused a server error.

The submitted variant was chr13:G.52532513G>C (GRCh37) and the error message was Unable to validate the submitted variant chr13:G.52532513G>C against the GRCh37 assembly. The corrected variant description chr13:G.52532513G>C validated without error.

It ought to be possible for the case of the prefix to corrected automatically.

Peter-J-Freeman commented 1 year ago

seriously? chr13:G.52532513G>C. I'm going to hit my head against a wall then fix it

Peter-J-Freeman commented 1 year ago

Done